BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0016.p
         (154 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

TM0567 [K] COG1959 Predicted transcriptional regulator                 49   2e-06
STM0567 [O] COG1076 DnaJ-domain-containing proteins 1                  49   2e-06
alr4551 [K] COG1959 Predicted transcriptional regulator                49   3e-06

>TM0567 [K] COG1959 Predicted transcriptional regulator
          Length = 137

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 8/126 (6%)

Query: 27  LQALIIMARKEGNTCSSCEI--AGHLSSEPTVLRKALAKLTKEQILVTREGRDGGYMLNR 84
           L+ +I+MA++ GN  S  EI      S       K L  L K  ++ TR G+ GGYML+R
Sbjct: 10  LRLMIVMAKEYGNYLSMTEILEKAKQSVPREFAEKILYTLKKAGLVKTRRGKSGGYMLSR 69

Query: 85  SPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEMNQSALGILQKYT 144
            P+E+ ++EI   ++    + + V   M G     ++      + + +      IL   T
Sbjct: 70  PPKEIKVSEIVFLLD----RKSKVFFDMPGCP--DELDCVIRALWKRVENEIEKILSGVT 123

Query: 145 LADLVR 150
           L DLVR
Sbjct: 124 LEDLVR 129


>STM0567 [O] COG1076 DnaJ-domain-containing proteins 1
          Length = 391

 Score = 49.3 bits (116), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 6/126 (4%), Positives = 27/126 (21%), Gaps = 8/126 (6%)

Query: 27  LQALIIMARKEGNTCSSCEI--AGHLSSEPTVLRKALAKLTKEQILVTREGRDGGYMLNR 84
           +    I    E                +  + + +A+        +              
Sbjct: 10  IIKSAIELEDEEIIRQQLIYLKNEPQDAVISAIAQAIEARRFSDAMQEIAAWLQAQRALS 69

Query: 85  SPEELTLAEIYLAMEVDGLQSNAVIETMYGNTFGAQMKSACGGILEEMNQSALGILQKYT 144
           + ++ ++A   L ++       A +  +                 +  +     ++ +  
Sbjct: 70  TWQDPSIAASKLELK----ALEAQLRDLIDKR--NARVQILDDFNDLYHLRLGPLMSRIL 123

Query: 145 LADLVR 150
                 
Sbjct: 124 ELRKQL 129


>alr4551 [K] COG1959 Predicted transcriptional regulator
          Length = 359

 Score = 48.9 bits (115), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 8/104 (7%), Positives = 22/104 (21%), Gaps = 5/104 (4%)

Query: 45  EIAGHLSSEPTVLRKALAKLTKEQILVTREGRDGGYMLNRSPEELTLAEIYLAMEVDGLQ 104
            +    +    +L  A      +   V R             + + L E +       L 
Sbjct: 31  AVVKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDAR--DLP 88

Query: 105 SNAVIETMYGNTFGAQMKSACGGILEEMNQSALGILQKYTLADL 148
           + +                        +++     ++  T    
Sbjct: 89  TISAQHFHTAVHNEE---QLAALEEASLDEPVTVWMKLDTGMHR 129


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.132    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,428,733
Number of extensions: 382935
Number of successful extensions: 1736
Number of sequences better than 1.0e-05: 5
Number of HSP's gapped: 1750
Number of HSP's successfully gapped: 5
Length of query: 154
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 57
Effective length of database: 27,191,033
Effective search space: 1549888881
Effective search space used: 1549888881
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 111 (47.4 bits)