BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0391.0005.p
         (86 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_kinB [T] COG0642 Signal transduction histidine kinase               56   1e-08
BS_kinA_3 [T] COG0642 Signal transduction histidine kinase             50   6e-07
BS_kinC_2 [T] COG0642 Signal transduction histidine kinase             50   1e-06

>BS_kinB [T] COG0642 Signal transduction histidine kinase
          Length = 429

 Score = 55.8 bits (133), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/51 (54%), Positives = 33/51 (64%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGTEV 51
           M   ++  LGEPYYS K  GTGLGL VTF IIE  +G+I F S   +GT V
Sbjct: 369 MTDHQMQKLGEPYYSLKTNGTGLGLTVTFSIIEHHHGTISFNSSFQKGTTV 419


>BS_kinA_3 [T] COG0642 Signal transduction histidine kinase
          Length = 236

 Score = 50.4 bits (119), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 24/44 (54%), Positives = 29/44 (65%)

Query: 6   LAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGT 49
           L  +GEP+ + K+KGTGLGLMVTF IIE   G I   S   +GT
Sbjct: 184 LNRIGEPFLTTKEKGTGLGLMVTFNIIENHQGVIHVDSHPEKGT 227


>BS_kinC_2 [T] COG0642 Signal transduction histidine kinase
          Length = 248

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 20/49 (40%), Positives = 34/49 (69%)

Query: 1   MKMSELAHLGEPYYSNKKKGTGLGLMVTFRIIEAMNGSIQFQSRKGEGT 49
           M   +L  +G+P+YS K+KGTGLGL +  RI++  +G ++ +S  G+G+
Sbjct: 188 MPQEKLKQIGKPFYSTKEKGTGLGLPICLRILKEHDGELKIESEAGKGS 236


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.319    0.136    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,774,193
Number of extensions: 108637
Number of successful extensions: 912
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 919
Number of HSP's successfully gapped: 4
Length of query: 86
Length of database: 38,378,431
Length adjustment: 56
Effective length of query: 30
Effective length of database: 31,919,727
Effective search space: 957591810
Effective search space used: 957591810
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 109 (46.6 bits)