BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0389.0015.p (248 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_ecsA [V] COG1131 ABC-type multidrug transport system, ATPase ... 257 1e-68 SA1655 [V] COG1131 ABC-type multidrug transport system, ATPase c... 248 9e-66 L58125 [V] COG1131 ABC-type multidrug transport system, ATPase c... 243 1e-64 SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase c... 218 6e-57 SPy1729 [V] COG1131 ABC-type multidrug transport system, ATPase ... 216 3e-56 >BS_ecsA [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 247 Score = 257 bits (656), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 121/240 (50%), Positives = 164/240 (68%), Gaps = 1/240 (0%) Query: 6 VLQITGLSGGYSLNKPVLHDIGLEVQPGEMVGLIGLNGAGKSTTMKHILGLMSPHKGEIT 65 +L + L+GGY+ N PVL ++ ++P ++VGLIGLNGAGKSTT++HI+GLM PHKG I Sbjct: 3 LLSVKDLTGGYTRN-PVLKNVSFTLEPNQIVGLIGLNGAGKSTTIRHIIGLMDPHKGSIE 61 Query: 66 VQGKTRSSDPEAYHGALSFVPESPLLYEEMTVREHVEFTARAYGVEQSDYESRSSRLAAL 125 + GKT + DPE Y +++PE+P+LYEE+T+ EH+E TA AYG+ + E R L Sbjct: 62 LNGKTFAEDPEGYRSQFTYIPETPVLYEELTLMEHLELTAMAYGLSKETMEKRLPPLLKE 121 Query: 126 FNMDDKMDTLSSHLSKGMKQKVMIMCAFVARPALYVIDEPFLGLDPLGIRSLLDFMLELK 185 F M+ ++ +H SKGMKQKVMIMCAF+A PALY+IDEPFLGLDPL I +LL+ M E K Sbjct: 122 FRMEKRLKWFPAHFSKGMKQKVMIMCAFLAEPALYIIDEPFLGLDPLAINALLERMNEAK 181 Query: 186 NTGAXXXXXXXXXXXXENYCDRFIVLHRGKVIAQGTLAEMSAAAGLQGLNLEQLFYELVQ 245 GA E YCD FI+LH G+V A+GTL+E+ G++ L+ L+ EL + Sbjct: 182 KGGASVLMSTHILATAERYCDSFIILHNGEVRARGTLSELREQFGMKDAALDDLYLELTK 241 >SA1655 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 246 Score = 248 bits (632), Expect = 9e-66, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 163/241 (67%), Gaps = 1/241 (0%) Query: 7 LQITGLSGGYSLNKPVLHDIGLEVQPGEMVGLIGLNGAGKSTTMKHILGLMSPHKGEITV 66 +++ L+GGY +PV+ DI E+ GE+VGLIGLNGAGKSTT+KH+LGL++P +G +++ Sbjct: 3 VKVEQLTGGYG-KRPVIKDINFELNKGEIVGLIGLNGAGKSTTIKHMLGLLTPMEGSLSI 61 Query: 67 QGKTRSSDPEAYHGALSFVPESPLLYEEMTVREHVEFTARAYGVEQSDYESRSSRLAALF 126 + D EAY LS++PESP++YEE+T+ EH+E TA AY +++ + +R+ L F Sbjct: 62 SDININDDIEAYRRKLSYIPESPVIYEELTLEEHIEMTAMAYDIDRDEAMNRAMPLLKTF 121 Query: 127 NMDDKMDTLSSHLSKGMKQKVMIMCAFVARPALYVIDEPFLGLDPLGIRSLLDFMLELKN 186 +++++ SH SKGMKQKVMI+CAF+ P LY+IDEPFLGLDPLGI+S+LD M+E KN Sbjct: 122 RLENELKVFPSHFSKGMKQKVMIICAFIVNPELYIIDEPFLGLDPLGIQSMLDLMVEKKN 181 Query: 187 TGAXXXXXXXXXXXXENYCDRFIVLHRGKVIAQGTLAEMSAAAGLQGLNLEQLFYELVQG 246 G E YCDRFI+L G+V+A G L + GL L+ ++ + QG Sbjct: 182 EGRTVLMSTHILATAERYCDRFIILDEGEVVAFGDLEALRQQTGLHNQTLDDIYIHVTQG 241 Query: 247 G 247 G Sbjct: 242 G 242 >L58125 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 256 Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 111/242 (45%), Positives = 164/242 (67%), Gaps = 1/242 (0%) Query: 6 VLQITGLSGGYSLNKPVLHDIGLEVQPGEMVGLIGLNGAGKSTTMKHILGLMSPHKGEIT 65 +L++T L+GGY L PVL D+ E++ GE+VGLIGLNGAGKSTT++ I+GL++P+ G+I Sbjct: 1 MLKVTNLTGGY-LGHPVLKDLNFEIKEGELVGLIGLNGAGKSTTIQEIIGLLTPYSGQIE 59 Query: 66 VQGKTRSSDPEAYHGALSFVPESPLLYEEMTVREHVEFTARAYGVEQSDYESRSSRLAAL 125 + G T D E Y + F+PE+P LYEE+T+REH+E TA AYG+ R+ +L Sbjct: 60 LDGLTLQQDLEGYRRKIGFIPETPSLYEELTLREHIEVTALAYGISVDLAFERAEKLLET 119 Query: 126 FNMDDKMDTLSSHLSKGMKQKVMIMCAFVARPALYVIDEPFLGLDPLGIRSLLDFMLELK 185 F + DK+D + SKGMKQKVMI+CAF+ P+LY++DEPF+GLDPL I+ L+D M+++K Sbjct: 120 FRLSDKLDWFPVNFSKGMKQKVMIICAFLVEPSLYIVDEPFMGLDPLAIQDLIDLMIDMK 179 Query: 186 NTGAXXXXXXXXXXXXENYCDRFIVLHRGKVIAQGTLAEMSAAAGLQGLNLEQLFYELVQ 245 +G+ E +CD+FIVLH G+V+A GT+ E+ +L++++ L + Sbjct: 180 KSGSSILMSTHILSTAEKFCDKFIVLHEGQVVAFGTVEELRTQFNQPKASLDEIYLALTK 239 Query: 246 GG 247 G Sbjct: 240 GN 241 >SP0522 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 243 Score = 218 bits (556), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 1/240 (0%) Query: 6 VLQITGLSGGYSLNKPVLHDIGLEVQPGEMVGLIGLNGAGKSTTMKHILGLMSPHKGEIT 65 +L+I L+GGY ++ PVL D+ V+ G++VGLIGLNGAGKSTT+ I+GL++P+ G I Sbjct: 1 MLEIKNLTGGY-VHVPVLKDVSFTVESGQLVGLIGLNGAGKSTTINEIIGLLAPYSGSIN 59 Query: 66 VQGKTRSSDPEAYHGALSFVPESPLLYEEMTVREHVEFTARAYGVEQSDYESRSSRLAAL 125 + G T D +Y + ++PE+P LYEE+T+REH+E A AYG+EQ R L + Sbjct: 60 INGLTLQGDATSYRKQIGYIPETPSLYEELTLREHIETVAMAYGIEQKVAFERVEPLLKM 119 Query: 126 FNMDDKMDTLSSHLSKGMKQKVMIMCAFVARPALYVIDEPFLGLDPLGIRSLLDFMLELK 185 F ++ K+D H SKGMKQKVMI+CAFV P+L+++DEPFLGLDPL I L+ + K Sbjct: 120 FRLEQKLDWFPVHFSKGMKQKVMIICAFVVDPSLFIVDEPFLGLDPLAISDLIQLLEVEK 179 Query: 186 NTGAXXXXXXXXXXXXENYCDRFIVLHRGKVIAQGTLAEMSAAAGLQGLNLEQLFYELVQ 245 G E CD F++LH+G+V ++G L ++ A + +L ++ L + Sbjct: 180 QKGKSILMSTHVLDSAEKMCDAFVILHKGEVRSKGNLLQLREAFDMPEASLNDIYLALTK 239 >SPy1729 [V] COG1131 ABC-type multidrug transport system, ATPase component Length = 241 Score = 216 bits (550), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 104/240 (43%), Positives = 150/240 (62%), Gaps = 1/240 (0%) Query: 6 VLQITGLSGGYSLNKPVLHDIGLEVQPGEMVGLIGLNGAGKSTTMKHILGLMSPHKGEIT 65 +L I L+GGY N PVL+D+ V GE+VGLIGLNGAGKSTT+ I+G + P++G I+ Sbjct: 1 MLNIKNLTGGYH-NIPVLNDVSFSVDNGELVGLIGLNGAGKSTTINEIIGFLKPYQGSIS 59 Query: 66 VQGKTRSSDPEAYHGALSFVPESPLLYEEMTVREHVEFTARAYGVEQSDYESRSSRLAAL 125 + G T + + AY + F+PE+P LYEE+T+ EH+ A AY ++ + R+ + Sbjct: 60 IDGLTLAENAVAYRQKIGFIPETPSLYEELTLSEHINTVAMAYDIDLEVAQKRAQPFLEM 119 Query: 126 FNMDDKMDTLSSHLSKGMKQKVMIMCAFVARPALYVIDEPFLGLDPLGIRSLLDFMLELK 185 F + DK++ + SKGMKQKVMI+CAFV P+L+++DEPFLGLDPL I L+ + K Sbjct: 120 FRLTDKLEWFPVNFSKGMKQKVMIICAFVIDPSLFILDEPFLGLDPLAISDLIQTLEVEK 179 Query: 186 NTGAXXXXXXXXXXXXENYCDRFIVLHRGKVIAQGTLAEMSAAAGLQGLNLEQLFYELVQ 245 G E CDRF++LH G+V AQGTLA++ A G + +L ++ L + Sbjct: 180 AKGKSILMSTHVLDSAERMCDRFVILHHGQVRAQGTLADLQEAFGDRSASLNDIYLALTK 239 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,865,465 Number of extensions: 728729 Number of successful extensions: 16021 Number of sequences better than 1.0e-05: 1969 Number of HSP's gapped: 14091 Number of HSP's successfully gapped: 2119 Length of query: 248 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 144 Effective length of database: 26,383,695 Effective search space: 3799252080 Effective search space used: 3799252080 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 114 (48.5 bits)