BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0387.0002.p
         (58 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0655 [K] COG1733 Predicted transcriptional regulators                88   3e-18
CAC3338 [K] COG1733 Predicted transcriptional regulators               68   4e-12
FN1232 [K] COG1733 Predicted transcriptional regulators                67   7e-12
MA0333 [K] COG1733 Predicted transcriptional regulators                64   7e-11
mll7749 [K] COG1733 Predicted transcriptional regulators               60   1e-09

>BH0655 [K] COG1733 Predicted transcriptional regulators
          Length = 113

 Score = 87.8 bits (216), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 40/47 (85%), Positives = 44/47 (93%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQNS 58
           LEADG+V+RKEYPQVPPKVEYSLTDKA TLLP+LE LCEWG KNQN+
Sbjct: 67  LEADGLVKRKEYPQVPPKVEYSLTDKAGTLLPILEELCEWGVKNQNN 113


>CAC3338 [K] COG1733 Predicted transcriptional regulators
          Length = 106

 Score = 67.8 bits (164), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 38/44 (86%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKN 55
           LE+  ++ RKEYPQ+PPKVEYSLT+K E+L+P+++ +CEWG KN
Sbjct: 62  LESKNIISRKEYPQIPPKVEYSLTEKGESLIPLIKDMCEWGIKN 105


>FN1232 [K] COG1733 Predicted transcriptional regulators
          Length = 113

 Score = 67.0 bits (162), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 26/45 (57%), Positives = 35/45 (77%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKNQ 56
           LE D ++ RKEYPQ+PP+VEYSL+ K  TL+P+L  +C+WG KN 
Sbjct: 68  LEEDNIIIRKEYPQIPPRVEYSLSKKGRTLIPILNMMCDWGEKNS 112


>MA0333 [K] COG1733 Predicted transcriptional regulators
          Length = 127

 Score = 63.5 bits (153), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 27/41 (65%), Positives = 36/41 (87%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWG 52
           LEADG+V R+ YP++PP+VEYSLT+  +T++PVLE LCEWG
Sbjct: 63  LEADGLVFREVYPEIPPRVEYSLTEFGKTVIPVLEALCEWG 103


>mll7749 [K] COG1733 Predicted transcriptional regulators
          Length = 120

 Score = 59.7 bits (143), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 27/44 (61%), Positives = 33/44 (75%)

Query: 12  LEADGMVRRKEYPQVPPKVEYSLTDKAETLLPVLEWLCEWGTKN 55
           LEADG++ RK YP+VPPKVEYSLT +  +L PV+  L EWG  N
Sbjct: 65  LEADGLIDRKIYPEVPPKVEYSLTPRGRSLAPVITALKEWGDAN 108


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.315    0.133    0.420 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,609,192
Number of extensions: 152468
Number of successful extensions: 199
Number of sequences better than 1.0e-05: 29
Number of HSP's gapped: 199
Number of HSP's successfully gapped: 29
Length of query: 58
Length of database: 38,378,431
Length adjustment: 31
Effective length of query: 27
Effective length of database: 34,803,077
Effective search space: 939683079
Effective search space used: 939683079
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 109 (46.6 bits)