BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0042.p (320 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 422 e-118 BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 407 e-113 CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPa... 404 e-113 BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPa... 401 e-112 BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPas... 394 e-110 >BH3645 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 322 Score = 422 bits (1085), Expect = e-118, Method: Compositional matrix adjust. Identities = 193/317 (60%), Positives = 247/317 (77%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +LEV+NL K + I GFF+++VG V+AVD ++ SV +GE L +VGESGCGKSTTG+AILR Sbjct: 5 LLEVKNLTKSFDINGGFFSRKVGEVRAVDNLSFSVYEGEVLGIVGESGCGKSTTGKAILR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 LIEP+ GE+ F GT++ +L +R+ R DMQ++FQDPYASL+PR T+++I+ EPL H Sbjct: 65 LIEPSSGEVYFAGTEITALSEGDMRKRRRDMQIIFQDPYASLNPRHTIEKIIREPLIVHQ 124 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 E RVEEL++ VGLS A R+PH+FSGGQRQRIGIARALA++PK ++CDEPVS Sbjct: 125 IGTKKEQLERVEELLETVGLSSDHATRYPHQFSGGQRQRIGIARALAVHPKLVICDEPVS 184 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 ALDVS+Q+Q+LNLM DL+E + LTY+FI+HDLSVVK ISDRVAVMYLGR+VE+A +LF Sbjct: 185 ALDVSVQSQILNLMADLKETFALTYIFIAHDLSVVKHISDRVAVMYLGRMVEMATKDQLF 244 Query: 244 AKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKDE 303 P HPYT+AL+SAVPVP+P K +I+L GDVP+P PP GCAFH RCP MD C+ Sbjct: 245 ENPKHPYTRALLSAVPVPDPDAAKEKILLKGDVPSPSNPPEGCAFHTRCPDCMDVCKIKR 304 Query: 304 PVLRQLDSGHQVSCHLY 320 P L + + GH V+CHLY Sbjct: 305 PSLHEKEKGHYVACHLY 321 >BH0027 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 338 Score = 407 bits (1045), Expect = e-113, Method: Compositional matrix adjust. Identities = 189/318 (59%), Positives = 243/318 (76%), Gaps = 3/318 (0%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +L+V LK+++PI+ G + V VKAVD ++ ++ +GET+++VGESGCGKSTTGRAILR Sbjct: 5 LLKVEGLKQYFPIKGGILGRTVNHVKAVDDVSFTIYEGETVSIVGESGCGKSTTGRAILR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 L EPTDG+I F G D+ SL+ ++R+ R D+Q++FQDPYAS++PR T++++LEE + Sbjct: 65 LDEPTDGKIEFQGEDLLSLNKREMRKKRKDLQIIFQDPYASINPRQTIRQVLEEAMEIQK 124 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 ++ R+ ELM VGL +QA RFPHEFSGGQRQRIGIARAL++NPK IVCDE VS Sbjct: 125 VVPRDKRGERIRELMDTVGLGSHQADRFPHEFSGGQRQRIGIARALSVNPKLIVCDEAVS 184 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 ALDVSIQAQV+NL++ LQ ++ LTY+FISHDL VV+ ISDRV VMYLGRIVE+A LF Sbjct: 185 ALDVSIQAQVINLLKRLQREFKLTYLFISHDLGVVRHISDRVIVMYLGRIVEIADKTSLF 244 Query: 244 AKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKDE 303 P HPYT+AL+SA+PVP+P KK RI+L GDVP+P PP+GC FH RCPFA DKCR + Sbjct: 245 ENPQHPYTKALLSAIPVPDPEKKKERIILKGDVPSPIDPPNGCRFHTRCPFATDKCRTET 304 Query: 304 PVLRQLD---SGHQVSCH 318 P LR D GH +CH Sbjct: 305 PELRTADYMKDGHLAACH 322 >CAC0180 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 321 Score = 404 bits (1038), Expect = e-113, Method: Compositional matrix adjust. Identities = 182/316 (57%), Positives = 243/316 (76%) Query: 3 AILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAIL 62 AIL+VRNLKK++PI+ GFF K G VK+VD ++ + + E + +VGESGCGK+TTGR +L Sbjct: 4 AILKVRNLKKYFPIKTGFFRKTTGYVKSVDDVSFDIAENEIMGLVGESGCGKTTTGRTLL 63 Query: 63 RLIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTH 122 RL+E T+GE+L+ G D+ SL+ + LR R ++QM+FQDPY+SL+PR TV I+ E L H Sbjct: 64 RLMEKTEGEVLYRGKDLFSLNKKSLRNLRPEIQMIFQDPYSSLNPRMTVGEIVGEALLDH 123 Query: 123 GAAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPV 182 +E+ +VEE++ GL+ Y RFPHEFSGGQRQRIGIARAL LNPKFIV DEPV Sbjct: 124 KLCTKSEVNYKVEEMITACGLASYHMRRFPHEFSGGQRQRIGIARALILNPKFIVADEPV 183 Query: 183 SALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKEL 242 SALDVSIQAQV+NL+ +LQ++ G + +FISHDLSVV+ I ++ VMYLG +VELA +EL Sbjct: 184 SALDVSIQAQVINLLAELQKKKGFSCLFISHDLSVVQHICQKIGVMYLGSMVELAGNEEL 243 Query: 243 FAKPLHPYTQALMSAVPVPNPGLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRKD 302 F PLHPYT+AL+SA+P+P+P LK++RI+L GD+P+P PPSGC FH RC +A +KC K+ Sbjct: 244 FTNPLHPYTKALLSAIPIPDPTLKRNRIILKGDIPSPANPPSGCKFHTRCNYATEKCSKE 303 Query: 303 EPVLRQLDSGHQVSCH 318 P +++ GH V+CH Sbjct: 304 VPEYKEVIKGHFVACH 319 >BS_appF [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 329 Score = 401 bits (1030), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/321 (58%), Positives = 245/321 (76%), Gaps = 3/321 (0%) Query: 3 AILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAIL 62 ILE+R++KK++PIR G F ++VG VKAVDG++ S++KGETL +VGESGCGKST GR ++ Sbjct: 8 TILELRDVKKYFPIRSGLFQRKVGDVKAVDGVSFSLKKGETLGIVGESGCGKSTAGRTMI 67 Query: 63 RLIEPTDGEILFDGTDVRSLDTEQLRR-FRTDMQMVFQDPYASLDPRWTVQRILEEPLRT 121 RL +PT+G+ILF G D+ +L E+LR+ R ++QMVFQDP+ASL+PR T++ I++EP T Sbjct: 68 RLYKPTEGQILFKGQDISNLSEEKLRKSVRKNIQMVFQDPFASLNPRKTLRSIIKEPFNT 127 Query: 122 HGAAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEP 181 H E +VEEL+ VGL P A R+PHEFSGGQRQRIGIARAL LNP+ I+ DEP Sbjct: 128 HNMYTMRERNEKVEELLARVGLHPSFAGRYPHEFSGGQRQRIGIARALTLNPELIIADEP 187 Query: 182 VSALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKE 241 VSALDVSIQ QV+NLM++LQE++ LTY+FISHDLSVV+ ISDRV VMYLG+++EL E Sbjct: 188 VSALDVSIQPQVINLMEELQEEFNLTYLFISHDLSVVRHISDRVGVMYLGKMMELTGKHE 247 Query: 242 LFAKPLHPYTQALMSAVPVPNP--GLKKSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKC 299 L+ PLHPYTQAL+S+VPV +K+ RIVL G++P+P PP GC FH RCP A C Sbjct: 248 LYDNPLHPYTQALLSSVPVTRKRGSVKRERIVLKGELPSPANPPKGCVFHTRCPVAKPIC 307 Query: 300 RKDEPVLRQLDSGHQVSCHLY 320 ++ P ++ H V+CHLY Sbjct: 308 KEQIPEFKEAAPSHFVACHLY 328 >BH0351 [E] COG4608 ABC-type oligopeptide transport system, ATPase component Length = 332 Score = 394 bits (1013), Expect = e-110, Method: Compositional matrix adjust. Identities = 181/318 (56%), Positives = 243/318 (76%), Gaps = 2/318 (0%) Query: 4 ILEVRNLKKHYPIRKGFFAKQVGAVKAVDGITLSVEKGETLAVVGESGCGKSTTGRAILR 63 +LE + L KH+ + +GFF ++ ++AVDG+ L++ GETL +VGESGCGKST G+ ++R Sbjct: 5 LLEAKGLTKHFDVSEGFFKRKKAVLRAVDGVDLTIYAGETLGIVGESGCGKSTLGQLLMR 64 Query: 64 LIEPTDGEILFDGTDVRSLDTEQLRRFRTDMQMVFQDPYASLDPRWTVQRILEEPLRTHG 123 L+EPT G + F G+D +L E LR+ R+D+Q++FQDP++SL+PR TV+ I+ EPL+TH Sbjct: 65 LLEPTRGTLSFAGSDFLALKGEALRQKRSDIQIIFQDPFSSLNPRMTVREIIGEPLKTHR 124 Query: 124 AAKSNELKSRVEELMQVVGLSPYQAHRFPHEFSGGQRQRIGIARALALNPKFIVCDEPVS 183 AK N+L RV+ELM VGL A R+PHEFSGGQRQRIGIARA+AL PK I+CDEPVS Sbjct: 125 LAKGNDLIKRVDELMDAVGLDRSYAKRYPHEFSGGQRQRIGIARAIALKPKLIICDEPVS 184 Query: 184 ALDVSIQAQVLNLMQDLQEQYGLTYMFISHDLSVVKFISDRVAVMYLGRIVELAPTKELF 243 ALDVSIQAQ+LNLM LQ+++ LT++FI+H L VK ISDR+AVMYLG++VELA LF Sbjct: 185 ALDVSIQAQILNLMVRLQKEFQLTFLFIAHGLPAVKHISDRMAVMYLGKVVELASKDALF 244 Query: 244 AKPLHPYTQALMSAVPVPNPGLK--KSRIVLTGDVPNPETPPSGCAFHPRCPFAMDKCRK 301 A+P+HPY++ L+ AVP+P+P ++ K + L GD+P+P PPSGC FHPRCP+A DKC Sbjct: 245 AQPMHPYSEGLIQAVPIPDPTVRNDKKWVTLEGDLPSPVHPPSGCRFHPRCPYAQDKCTV 304 Query: 302 DEPVLRQLDSGHQVSCHL 319 EP L + + GH V+CH Sbjct: 305 QEPALTEKEPGHFVACHF 322 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.137 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 23,207,379 Number of extensions: 918992 Number of successful extensions: 8990 Number of sequences better than 1.0e-05: 2107 Number of HSP's gapped: 5955 Number of HSP's successfully gapped: 2319 Length of query: 320 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 214 Effective length of database: 26,153,027 Effective search space: 5596747778 Effective search space used: 5596747778 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 116 (49.3 bits)