BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0040.p (427 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SSO1538 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 135 9e-32 BS_argE [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 125 9e-29 PAE2335 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 116 7e-26 HI0102 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminop... 114 3e-25 mlr1185 [E] COG0624 Acetylornithine deacetylase/Succinyl-diamino... 108 1e-23 >SSO1538 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 135 bits (341), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 0/417 (0%), Positives = 0/417 (0%), Gaps = 60/417 (14%) Query: 27 IRFPSENPPG-DSRDISSFIMEYLKQAGIDTEVHPATETML------------NLVSTLK 73 +EN +++ E + I T V A +L ++ + Sbjct: 23 SMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMD 82 Query: 74 TGAAEPSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMKAGLAGLIYA 133 + + ++ A + Sbjct: 83 DW-----NVRTHTASGLVERVKAST--MGDREAELATLEFLKQWVPAGKSPICGNSIGQD 135 Query: 134 MGLLSRLG-VPLRGDLALLVVPDEETGG--HLGVPWVLERELVTGTAAVI-AEPSGPLNP 189 L + + + A+ S Sbjct: 136 RRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRESVAELA 195 Query: 190 TIGQKGSCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEEVQEII 249 Sbjct: 196 ------- 248 Query: 250 RISQDYVKEREQDGSIAYQVFDHVTVNIGTIQGGTKVNVVADRCTVQVDSR-VPFGVDYR 308 Sbjct: 249 -------------------- 288 Query: 309 DVLDRARSLLLEAGIESEVKGFG-------FQGNANWTSTEEPIVSNLVESICEVSGEEA 361 Sbjct: 289 - 347 Query: 362 YGVLQWASSDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALK 418 Sbjct: 348 404 >BS_argE [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 125 bits (315), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 0/422 (0%), Positives = 0/422 (0%), Gaps = 60/422 (14%) Query: 36 GDSRDISSFIMEYLKQAGIDTEV----------HPATETML-------NLVSTLKTGAAE 78 + + ++ A + T+ ++ V T T + Sbjct: 36 LEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVHQSDEQLALMDDWNVRT-HTASG- 93 Query: 79 PSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMKAGLAGLIYAMGLLS 138 +++ D + G Sbjct: 94 -LVERVKASTMGDREAELATLEFLKQWVPAGKSPICGNSIGQDRRFLFKYMPELEAYFHY 152 Query: 139 RLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTGTAAVIAEPSGPLNPTIGQKGSCW 198 R E G + + +V Sbjct: 153 RYLDVSTLKELARRWKPEILDGFTKQGTHQAMDDIRE--SVAELAYY- 209 Query: 199 FEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEEVQEIIRISQDYVKE 258 Sbjct: 210 ------------------------ 245 Query: 259 REQDGSIAYQVFDH----VTVNIGTIQGGTKVNVVADRCTVQVDSRVPFGVDYRDVLDRA 314 Sbjct: 246 305 Query: 315 RSLLLEAGIESE--------VKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEA-YGVL 365 Sbjct: 306 365 Query: 366 QWASSDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVYALTALKYLGVEES 425 Sbjct: 366 425 Query: 426 GK 427 Sbjct: 426 427 >PAE2335 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 116 bits (291), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 0/402 (0%), Positives = 0/402 (0%), Gaps = 42/402 (10%) Query: 27 IRFPSENPPGDSR-DISSFIMEYLKQAGIDTEV--HPATETMLNLVST-------LKTGA 76 E + ++ I L+ G+D E T++ + Sbjct: 13 QYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLNILAEGPTIAVH 72 Query: 77 AEPSDKKLIFCGHTDVVPAGDRSRWDFD-PFCGDIVDGYLLGRGASDMKAGLAGLIYAMG 135 + + V S L + AG G Sbjct: 73 QSD---EQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGKSPICG 129 Query: 136 LLSRLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTGTAAVIAEPSGPLNPTIGQKG 195 L + E + + +EL I + Sbjct: 130 NSIGQDR---RFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAMDD 186 Query: 196 SCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLWDIKPDIPEEVQEIIRISQDY 255 + H Sbjct: 187 IRESVAELAYYREHFI----------- 235 Query: 256 VKEREQDGSIAYQVFDHVTVNI-GTIQGGTKVNVVADRCTVQVDSRVPFGVDY----RDV 310 Sbjct: 236 -------- 287 Query: 311 LDRARSLLLEAGIESEVKGFGFQGNANWTSTEEPIVSNLVESICEVSGEEAYGVLQWASS 370 Sbjct: 288 - 346 Query: 371 DARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVY 412 Sbjct: 347 388 >HI0102 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 114 bits (286), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 0/403 (0%), Positives = 0/403 (0%), Gaps = 65/403 (16%) Query: 27 IRFPSENPPGDSRDISSFIMEYLKQAGIDTEVHPATETMLNLVSTLKTGAAEPSDKKLIF 86 E ++ ++ + + + + A + ++ Sbjct: 13 QYSHCEWV--ENSMSANENNLIWIDLEMTGLDPERDRI-IEIAT--LVTDANLN---ILA 64 Query: 87 CGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGRGASDMKAGLAGLIYAMGLLSRLGVPLRG 146 G T V D D + L G A + VP Sbjct: 65 EGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKASTMGDREAELATLEFLKQWVPAGK 124 Query: 147 DLALLVVPDEETGGHLGVPWVLERELVTG---TAAVIAEPSGPLN----PTIGQKGSCWF 199 ++ LE + + Q Sbjct: 125 SPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQGTHQAM 184 Query: 200 EFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRL-WDIKPDIPEEVQEIIRISQDYVKE 258 + E Sbjct: 185 DDIRESVAELAYY----------------------- 221 Query: 259 REQDGSIAYQVFDHVTVNIGTIQGGT-KVNVVADRCTVQVDSRVPFGVDYRDVLDRARSL 317 Sbjct: 222 ------ 275 Query: 318 LLEAGIESEVKGFGFQGNANWTSTEEPIVS---NLVESICEVSGEEAYGVLQWA-----S 369 Sbjct: 276 ---------- 325 Query: 370 SDARHFRTHQIPVLQYGPAELSTIHNFNEKAPVWQIIQCAKVY 412 Sbjct: 326 - 367 >mlr1185 [E] COG0624 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases Length = 204 Score = 108 bits (271), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 0/435 (0%), Positives = 0/435 (0%), Gaps = 47/435 (10%) Query: 5 KSKVLSAIDAXXXXXXXXXXXXIRFPSENPPGDS-RDISSFIMEYLKQAGIDTEV----- 58 + + N Sbjct: 2 GKTSMIHAIVDQYSHCEWVENSMSANENNLIWIDLEMTGLDPERDRIIEIATLVTDANLN 61 Query: 59 HPATETMLNLVSTLKTGAAEPSDKKLIFCGHTDVVPAGDRSRWDFDPFCGDIVDGYLLGR 118 A + + + + A V D +L Sbjct: 62 ILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAS--TMGDREAELATLEFLKQW 119 Query: 119 GASDMKAGLAGLIYAMGLLSRLGVPLRGDLALLVVPDEETGGHLGVPWVLERELVTGTA- 177 + I +P D T L W E Sbjct: 120 VPAGKSPICGNSIGQDRRFLFKYMPELEAYFHYRYLDVSTLKELARRWKPEILDGFTKQG 179 Query: 178 --AVIAEPSGPLNPTIGQKGSCWFEFTVEGTPGHGSLAPVVGESAIVKAAKGIEALQRLW 235 Sbjct: 180 TH--- 236 Query: 236 DIKPDIPEEVQEIIRISQDYVKEREQDGSIAYQVFDHVTVNIGTIQGGTKVNV------- 288 Sbjct: 237 --------------- 281 Query: 289 -VADRCTVQVDSRVPFGVDYRDVLDRARSLLLEAGIESEVKGFGFQGN------ANWTST 341 Sbjct: 282 -- 339 Query: 342 EEPIVSNLVESICEVSGEEAYGVLQWASSDARHFRT--HQIPVLQYGPAELSTIHNFNEK 399 Sbjct: 340 399 Query: 400 APVWQIIQCAKVYAL 414 Sbjct: 400 414 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.136 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,186,440 Number of extensions: 1485336 Number of successful extensions: 2831 Number of sequences better than 1.0e-05: 85 Number of HSP's gapped: 2747 Number of HSP's successfully gapped: 85 Length of query: 427 Length of database: 38,378,431 Length adjustment: 109 Effective length of query: 318 Effective length of database: 25,807,025 Effective search space: 8206633950 Effective search space used: 8206633950 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 117 (49.7 bits)