BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0038.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 282 5e-76 BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 262 5e-70 ECs2089 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel tran... 261 1e-69 FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel trans... 259 3e-69 ddpC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transpo... 259 5e-69 >BH0030 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 301 Score = 282 bits (721), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 131/276 (47%), Positives = 195/276 (70%), Gaps = 1/276 (0%) Query: 22 KTLIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDN 81 K + L N+ A +GL LI+ + V ALI P+ HDPY ++ NKL PS HWFGTD+ Sbjct: 27 KNFYKKLAKNKAAMVGLSLIIFFIVVALIGPYFTTHDPYEPNVMNKLAEPSAEHWFGTDH 86 Query: 82 FGRDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFP 141 GRDIF+R+++G I+++ G +V + ++GV LG V+ YYG T+IMR+MDVLL+FP Sbjct: 87 HGRDIFTRIIHGMSITLYVGFFSVVLGAIVGVILGVVSGYYGRLVDTVIMRIMDVLLAFP 146 Query: 142 SLVLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSV 201 ++L++AI + +G + + +IAVGI IP FAR++ G T+++R+ EY++A +A+G ++ Sbjct: 147 GILLALAIISILGGSINNVIIAVGIFSIPVFARIVRGSTLAVRKLEYIDAVKALGASDAR 206 Query: 202 ILYRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISG 261 I+++HILPN L+P++VQ TL + +ILTAS+LSFLGLG +PPI EWGAM+S+GR Y+ Sbjct: 207 IIFKHILPNVLSPIIVQGTLSIATSILTASALSFLGLGAQPPIPEWGAMLSDGRNYMYDA 266 Query: 262 QWWLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRS 297 + FPGL I +L FN+ GDG RD LDP+ ++ Sbjct: 267 P-HVALFPGLAIVVVVLAFNIFGDGLRDALDPKSKN 301 >BH3642 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 306 Score = 262 bits (670), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 131/276 (47%), Positives = 194/276 (70%), Gaps = 1/276 (0%) Query: 22 KTLIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDN 81 + R L N+LA G+V++ + AL AP + H D A++LQ+PS HWFGTD+ Sbjct: 32 RDAFRQLRKNKLAMTGIVIVCFFLFIALFAPLLTTHSFDGYDAASRLQSPSAEHWFGTDD 91 Query: 82 FGRDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFP 141 GRD+F+R+ YGA++S+ G AVA + L+G LG +A YYG +I R+ D++L+FP Sbjct: 92 LGRDVFTRIAYGAQLSLQVGFFAVAGALLVGTLLGVLAGYYGRWLDMLISRIFDIMLAFP 151 Query: 142 SLVLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSV 201 S++L++AI A +G L +AM+A+ IV IP F RL+ + +SLR +E++ A+RA G+KNS Sbjct: 152 SILLAIAIVAILGPSLHNAMVAIAIVNIPIFGRLVRSKVISLRAEEFIMAARAQGMKNSR 211 Query: 202 ILYRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISG 261 IL+ HILPN+L+P++VQATLG G AIL A++L FLGLG + P+AEWG M+++ R YI + Sbjct: 212 ILFHHILPNSLSPIIVQATLGFGTAILEAAALGFLGLGAQAPLAEWGKMLADSRAYIQTA 271 Query: 262 QWWLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRS 297 W+ FPG+ I +LGFN++GDG RD LDP++++ Sbjct: 272 P-WVAIFPGMSIMLVVLGFNMIGDGLRDALDPKMKN 306 >ECs2089 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 298 Score = 261 bits (666), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 131/271 (48%), Positives = 186/271 (68%), Gaps = 1/271 (0%) Query: 24 LIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDNFG 83 L+ +L + L G V+IV+ + + +PW+A HDP D+ +L PS +HWFGTD G Sbjct: 23 LVWMLKGSPLTVTGAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVG 82 Query: 84 RDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPSL 143 RD+FSRVL G++ SI GL+ VAI+ +IG LG ++ GGR IIMR+MD++LS PSL Sbjct: 83 RDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSL 142 Query: 144 VLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVIL 203 VL+MA+AA++G L +AM+A+ IV IP + RL GQ + +R+ YV+A++ G ++ Sbjct: 143 VLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLI 202 Query: 204 YRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQW 263 HIL N+L PL+VQA+L +G AIL A++L F+GLG + P AEWGAM++ GR Y++ QW Sbjct: 203 NWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLD-QW 261 Query: 264 WLVTFPGLGIATSILGFNLLGDGFRDVLDPR 294 W FPG I + +GFNL GDG RD+LDP+ Sbjct: 262 WYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292 >FN0398 [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 289 Score = 259 bits (662), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 125/274 (45%), Positives = 202/274 (73%), Gaps = 3/274 (1%) Query: 26 RLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYL--TDMANKLQAPSGSHWFGTDNFG 83 R+L NR+A +GL++++I + AL A IA +D + ++A +L P+G HW GTD FG Sbjct: 17 RMLRKNRMAMLGLIILIILVLLALFADVIANYDTIVIKQNLAERLMPPNGKHWLGTDEFG 76 Query: 84 RDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPSL 143 RDIF+R+++GAR+S+ G++A++IS ++G LG ++ Y+GG +IMR++D+ L+ PS+ Sbjct: 77 RDIFARLIHGARVSLKVGILAISISVVVGGILGAISGYFGGVIDNVIMRVVDIFLAVPSI 136 Query: 144 VLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVIL 203 +L++AI +++G + + MI++ + +P FAR++ +S+R++E++EA++AIG NS I+ Sbjct: 137 LLAIAIVSALGPSMLNLMISISVSYVPNFARIVRASVLSIRDQEFIEAAKAIGASNSRII 196 Query: 204 YRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQW 263 +HI+PN+LAP++VQ TLG+ AIL+ + LSF+GLG++PP EWG+M+S GR+Y + W Sbjct: 197 MKHIIPNSLAPVIVQGTLGVAGAILSTAGLSFIGLGIQPPAPEWGSMLSGGRQY-LRYAW 255 Query: 264 WLVTFPGLGIATSILGFNLLGDGFRDVLDPRLRS 297 W+ TFPG+ I +IL NLLGDG RD LDPRL+ Sbjct: 256 WVTTFPGVAIMITILSLNLLGDGLRDALDPRLKQ 289 >ddpC [EP] COG1173 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 298 Score = 259 bits (661), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 130/271 (47%), Positives = 185/271 (68%), Gaps = 1/271 (0%) Query: 24 LIRLLLHNRLAAIGLVLIVIWTVTALIAPWIAPHDPYLTDMANKLQAPSGSHWFGTDNFG 83 L+ +L + L V+IV+ + + +PW+A HDP D+ +L PS +HWFGTD G Sbjct: 23 LVWMLKGSPLTVTSAVIIVLMLLMMIFSPWLATHDPNAIDLTARLLPPSAAHWFGTDEVG 82 Query: 84 RDIFSRVLYGARISIWTGLIAVAISFLIGVPLGGVAAYYGGRTGTIIMRLMDVLLSFPSL 143 RD+FSRVL G++ SI GL+ VAI+ +IG LG ++ GGR IIMR+MD++LS PSL Sbjct: 83 RDLFSRVLVGSQQSILAGLVVVAIAGMIGSLLGCLSGVLGGRADAIIMRIMDIMLSIPSL 142 Query: 144 VLSMAIAASIGAGLTSAMIAVGIVGIPEFARLMFGQTVSLREKEYVEASRAIGVKNSVIL 203 VL+MA+AA++G L +AM+A+ IV IP + RL GQ + +R+ YV+A++ G ++ Sbjct: 143 VLTMALAAALGPSLFNAMLAIAIVRIPFYVRLARGQALVVRQYTYVQAAKTFGASRWHLI 202 Query: 204 YRHILPNALAPLMVQATLGMGFAILTASSLSFLGLGVKPPIAEWGAMISEGREYIISGQW 263 HIL N+L PL+VQA+L +G AIL A++L F+GLG + P AEWGAM++ GR Y++ QW Sbjct: 203 NWHILRNSLPPLIVQASLDIGSAILMAATLGFIGLGAQQPSAEWGAMVANGRNYVLD-QW 261 Query: 264 WLVTFPGLGIATSILGFNLLGDGFRDVLDPR 294 W FPG I + +GFNL GDG RD+LDP+ Sbjct: 262 WYCAFPGAAILLTAVGFNLFGDGIRDLLDPK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.142 0.430 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,770,123 Number of extensions: 952312 Number of successful extensions: 3985 Number of sequences better than 1.0e-05: 208 Number of HSP's gapped: 3783 Number of HSP's successfully gapped: 211 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)