BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0386.0037.p (325 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value AGl1478 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tran... 259 4e-69 BH3643 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel trans... 258 1e-68 Z2224 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transp... 242 5e-64 ddpB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transpo... 242 5e-64 BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel tra... 238 1e-62 >AGl1478 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 134 Score = 259 bits (662), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 0/327 (0%), Positives = 0/327 (0%), Gaps = 5/327 (1%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQ--APEETVNKIRQDMGLDKPLYIQFFSYF 58 + + + P+ F Sbjct: 12 TFSSPAFAASCEKNFTVSGVPMVTAVSYKSFQELPKAKA-PAVLQKLAQAVAAEGFSGIQ 70 Query: 59 GQLFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLD 118 +I T S RK Sbjct: 71 INKALSSIDAHQETSGSGRIQTLRVVARQKGAAVRIDAVFNIQAGQIADKDVIRKGICDI 130 Query: 119 HISRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSIL 178 Sbjct: 131 -- 188 Query: 179 SGDMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVI 238 Sbjct: 189 248 Query: 239 YKHALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTL 298 Sbjct: 249 308 Query: 299 VSAILYCGINLAVDLIYGLIDPRIRYE 325 Sbjct: 309 335 >BH3643 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 333 Score = 258 bits (658), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 141/324 (43%), Positives = 195/324 (60%), Gaps = 2/324 (0%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQ 60 +IP L+G+ +ITF + ++PG+PA + GEQA + V ++ + +GL++P +Q+ Y Sbjct: 12 LIPVLIGMTIITFSIVHLIPGNPAQTILGEQASPQAVAELEERLGLNEPYLVQYGYYVRD 71 Query: 61 LFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHI 120 L G+ G + T ++ ++ ++ S D+ Sbjct: 72 LLTGDFGTSLRTRAPISEEIVPYLGATLELTFFAMLFAVVVGVNAGIISAWKQHSFFDYA 131 Query: 121 SRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSG 180 + +L+G +PIFWL LM +IF LGW PA GR +P ITGLYVLD+IL Sbjct: 132 CMLVALLGVSMPIFWLALMQQWIFAQELGWFPA-FGR-DNPRDPIQSITGLYVLDAILHW 189 Query: 181 DMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYK 240 + ++ HLVLPAI L T MAI+ARMTRSSMLEV+ D++RT AKG + VIYK Sbjct: 190 RWDHVHVALKHLVLPAIALGTIPMAIIARMTRSSMLEVLRSDYIRTVHAKGSSQFVVIYK 249 Query: 241 HALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVS 300 HAL NA+IP LTV GLQ G L+GGA++TETIFSWPGIG Y+ ++I DY IQ+ LV Sbjct: 250 HALKNAMIPVLTVAGLQTGVLLGGAILTETIFSWPGIGRYIYEAITYRDYPVIQSGILVV 309 Query: 301 AILYCGINLAVDLIYGLIDPRIRY 324 AI++ INL VDL+Y IDPRI+Y Sbjct: 310 AIMFVVINLIVDLLYSYIDPRIKY 333 >Z2224 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 671 Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 18/316 (5%), Positives = 46/316 (14%), Gaps = 1/316 (0%) Query: 7 GIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQLFQGNI 66 + R +M A E E +R+ L+ G Sbjct: 6 QQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPELITPDSPTQRVGAA 65 Query: 67 GYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHISRVFSL 126 A + + + E LD ++ Sbjct: 66 PLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKNNEKVTWCCELKLDGLAVSILY 125 Query: 127 IGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGDMVALK 186 + + L Sbjct: 126 ENGVLVSAATRGDGTTGEDITSNVRTIR-AIPLKLHGENIPARLEVRGEVFLPQAGFEKI 184 Query: 187 SSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKHALVNA 246 + + + A + + L+ + H Sbjct: 185 NEDARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHLGRLL 244 Query: 247 LIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSAILYCG 306 + L A + + + + + + Sbjct: 245 QFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQLGFVA 304 Query: 307 INLAVDLIYGLIDPRI 322 + + Sbjct: 305 RAPRWAVAFKFPAQEQ 320 >ddpB [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 340 Score = 242 bits (618), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 135/316 (42%), Positives = 194/316 (61%), Gaps = 1/316 (0%) Query: 7 GIIVITFILSRVLPGDPAIMLAGEQAPEETVNKIRQDMGLDKPLYIQFFSYFGQLFQGNI 66 G+ VITFI+S ++PGDPA +LAG++A + V IRQ +GLD+PLY+QF+ Y LF G++ Sbjct: 20 GVCVITFIISHLIPGDPARLLAGDRASDAIVENIRQQLGLDQPLYVQFYRYVSDLFHGDL 79 Query: 67 GYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLDHISRVFSL 126 G + TG V +L FP + LDH+ R+ ++ Sbjct: 80 GTSIRTGRPVLEELRIFFPATLELAFGALLLALLIGIPLGILSAVWRNRWLDHLVRIMAI 139 Query: 127 IGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSILSGDMVALK 186 G P FWLGL I +FY L P GR+ L+PP+H+TG Y+LD++L G+ Sbjct: 140 TGISTPAFWLGLGVIVLFYGHLQILPGG-GRLDDWLDPPTHVTGFYLLDALLEGNGEVFF 198 Query: 187 SSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVIYKHALVNA 246 +++ HL+LPA+ L+ + IVAR RS+MLE + +D++RTARA GL ++ +AL NA Sbjct: 199 NALQHLILPALTLAFVHLGIVARQIRSAMLEQLSEDYIRTARASGLPGWYIVLCYALPNA 258 Query: 247 LIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTLVSAILYCG 306 LIP++TVLGL G L+ GAV+TET+F+WPG+G +V SI A D+ + F +V + Y Sbjct: 259 LIPSITVLGLALGDLLYGAVLTETVFAWPGMGAWVVTSIQALDFPAVMGFAVVVSFAYVL 318 Query: 307 INLAVDLIYGLIDPRI 322 +NL VDL+Y IDPRI Sbjct: 319 VNLVVDLLYLWIDPRI 334 >BMEI0435 [EP] COG0601 ABC-type dipeptide/oligopeptide/nickel transport systems, permease components Length = 347 Score = 238 bits (607), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 132/327 (40%), Positives = 191/327 (58%), Gaps = 5/327 (1%) Query: 1 MIPALLGIIVITFILSRVLPGDPAIMLAGEQ--APEETVNKIRQDMGLDKPLYIQFFSYF 58 ++P +GI ++ F RVLPGDP +++AGE+ +PE + Q +G D+P++ Q+ Y Sbjct: 24 LVPTFIGITIVAFAFVRVLPGDPVLLMAGERGVSPERHAELMAQ-LGFDRPIWEQYLLYV 82 Query: 59 GQLFQGNIGYAYHTGHSVASDLATRFPXXXXXXXXXXXXXXXXXXXXXXXXXTRKESVLD 118 L G+ G + T V + FP ++ S D Sbjct: 83 WNLLHGDFGQSLVTKKPVLVEFFALFPATVELSICAIILAVLIGIPAGVIAAVKRGSWFD 142 Query: 119 HISRVFSLIGACVPIFWLGLMFIYIFYSILGWAPAPMGRISGDLNPPSHITGLYVLDSIL 178 SL+G +PIFW L+ I F +L W P GRIS L + ++G ++DS+L Sbjct: 143 QGLMGISLVGYSMPIFWWALLLIIFFSGVLQWTPVS-GRIS-LLYYFTPVSGFMLIDSLL 200 Query: 179 SGDMVALKSSIVHLVLPAICLSTGTMAIVARMTRSSMLEVVDQDFVRTARAKGLKESAVI 238 SG A S+ HL+LP I L+T +A++AR TRS+MLEV+ +D+VRTARAKGL ++ Sbjct: 201 SGQKGAFLSAASHLILPTIVLATIPLAVIARQTRSAMLEVLGEDYVRTARAKGLPIRRIV 260 Query: 239 YKHALVNALIPTLTVLGLQFGYLMGGAVITETIFSWPGIGGYVTDSILAADYAPIQAFTL 298 HAL NA+IP +T +GLQ G LM GA++TETIFSWPGIG ++ DSI DY +Q+ L Sbjct: 261 GLHALRNAMIPVITTIGLQVGVLMAGAILTETIFSWPGIGKWMLDSISRRDYPVVQSGLL 320 Query: 299 VSAILYCGINLAVDLIYGLIDPRIRYE 325 + A + +NL VDL+YGLI+PRIR++ Sbjct: 321 LIAFIIMVVNLVVDLLYGLINPRIRHK 347 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.143 0.429 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,265,256 Number of extensions: 824681 Number of successful extensions: 3010 Number of sequences better than 1.0e-05: 190 Number of HSP's gapped: 2699 Number of HSP's successfully gapped: 215 Length of query: 325 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 218 Effective length of database: 26,037,693 Effective search space: 5676217074 Effective search space used: 5676217074 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)