BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0386.0025.p
         (138 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH1892 [S] COG2318 Uncharacterized protein conserved in bacteria      110   6e-25

>BH1892 [S] COG2318 Uncharacterized protein conserved in bacteria
          Length = 150

 Score =  110 bits (275), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 58/132 (43%), Positives = 82/132 (62%), Gaps = 10/132 (7%)

Query: 5   ELIKRRTGGPGSIYYTLFHIVECEYSWISALQGKPMPEEPPFEDYIGVQK---IRDYSAR 61
           +L   R GG GSI  TLFHIV+ E+SWI A++G    E+    DY  ++    IR +S  
Sbjct: 26  QLTAERIGGVGSILQTLFHIVDVEHSWIRAMKG----EKDLILDYESMKSLTYIRQHSEA 81

Query: 62  CHAEIAPFIYSWDSSMETRILSDQNAAGEWESFKYGEIMRHVLAHEIHHFGQLSIWSREL 121
           C  EI  F+ +W    E  ++      G   +++ GEI+RHV+AHEIHH GQLS+W+REL
Sbjct: 82  CQPEIYEFLQTWTDEQEEDLVDPHWLEG---TYRKGEILRHVIAHEIHHMGQLSVWAREL 138

Query: 122 GKQPVTANLIRR 133
           G++P++AN I R
Sbjct: 139 GREPISANYIDR 150


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.138    0.436 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,199,210
Number of extensions: 450437
Number of successful extensions: 538
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 1
Length of query: 138
Length of database: 38,378,431
Length adjustment: 95
Effective length of query: 43
Effective length of database: 27,421,701
Effective search space: 1179133143
Effective search space used: 1179133143
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 110 (47.0 bits)