BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0386.0007.p
         (71 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_bfmBAB [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase comp...    79   1e-15
lin1410 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase comple...    77   7e-15
BH2762 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex...    77   8e-15
SA1347 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex...    66   1e-11

>BS_bfmBAB [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit
          Length = 553

 Score = 79.3 bits (194), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 4/71 (5%), Positives = 15/71 (21%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           +     D  T               +   +  +         A+  +    +    +  +
Sbjct: 257 MQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316

Query: 61  VKAEMLRLAQY 71
                 + +Q 
Sbjct: 317 NADNARQASQL 327


>lin1410 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit
          Length = 553

 Score = 77.0 bits (188), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 4/71 (5%), Positives = 15/71 (21%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           +     D  T               +   +  +         A+  +    +    +  +
Sbjct: 257 MQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316

Query: 61  VKAEMLRLAQY 71
                 + +Q 
Sbjct: 317 NADNARQASQL 327


>BH2762 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit
          Length = 553

 Score = 76.6 bits (187), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 4/71 (5%), Positives = 15/71 (21%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           +     D  T               +   +  +         A+  +    +    +  +
Sbjct: 257 MQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316

Query: 61  VKAEMLRLAQY 71
                 + +Q 
Sbjct: 317 NADNARQASQL 327


>SA1347 [C] COG0022 Pyruvate/2-oxoglutarate dehydrogenase complex,
           dehydrogenase (E1) component, eukaryotic type, beta
           subunit
          Length = 553

 Score = 66.2 bits (160), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 4/71 (5%), Positives = 15/71 (21%)

Query: 1   VLIVHEDNKTXXXXXXXXXXXXXHCLFELDAPIFRLCGPDVPAMPISPPMEKFFMLSKDK 60
           +     D  T               +   +  +         A+  +    +    +  +
Sbjct: 257 MQRSLTDTVTHVREGSDAIYAGTREIAAGNTDLSSRTEQQASALEETAASMEQLTATVKQ 316

Query: 61  VKAEMLRLAQY 71
                 + +Q 
Sbjct: 317 NADNARQASQL 327


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.327    0.142    0.442 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,837,839
Number of extensions: 81222
Number of successful extensions: 152
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 153
Number of HSP's successfully gapped: 4
Length of query: 71
Length of database: 38,378,431
Length adjustment: 42
Effective length of query: 29
Effective length of database: 33,534,403
Effective search space: 972497687
Effective search space used: 972497687
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 109 (46.6 bits)