BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0013.p (278 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1119 [G] COG0395 ABC-type sugar transport system, permease com... 129 4e-30 BS_yesQ [G] COG0395 ABC-type sugar transport system, permease co... 122 5e-28 TM0430 [G] COG0395 ABC-type sugar transport system, permease com... 121 1e-27 STM0430 [K] COG2188 Transcriptional regulators 121 1e-27 lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 120 2e-27 >BH1119 [G] COG0395 ABC-type sugar transport system, permease component Length = 281 Score = 129 bits (325), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 150/278 (53%), Gaps = 13/278 (4%) Query: 1 MRTKEITGKTVLWI-FLLAFAFITLIPVVITILGSFKTNSEL-TTGATFLPSKWHFSNYA 58 M+TK V++ F++AF FI + P++ + S K SE+ + ++ +PS++ +SNY Sbjct: 1 MKTKRTWYADVIYYGFVIAFGFIMVYPILWMVASSLKPASEIFSQASSLIPSEFVWSNYP 60 Query: 59 EAW---DQANFSTYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMF 115 + W + F Y NS I++ S V G +L +S+ AY R+ F KK+ T+ Sbjct: 61 DGWAGFGRTGFDIYFKNSFIITTSVVIGAILSSSIVAYGFARLQFKFKKVLFACLIATVM 120 Query: 116 VAVGAVVLRPQFDLMVKLHLHSSLWGVILILISAHASIF-FILLSFMRGIPRELDEAARI 174 + V + L PQ+ L L ++ + +I+ F F+L+ F+RGIPRELDEAA I Sbjct: 121 LPV-QITLIPQYILFHNLGWVNTFYPLIVPAFLGGTPFFIFLLIQFIRGIPRELDEAAII 179 Query: 175 DGSSLGRTFWTIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLK 234 DG S FW +I A+F F W+++L PL++ + K ++QT+ +GL N Sbjct: 180 DGCSTFGVFWRVILPLLKPALVTVAIFAFMWTWDDFLAPLIY-LNKTDIQTVALGLRNF- 237 Query: 235 YGISAASQTHY--MMAGACLSILPILIAYVFANKSFMQ 270 + A S T + ++A + LS+LP I ++F + ++ Sbjct: 238 --MDAESGTSWGALLAMSTLSLLPQFIIFLFFQRYLVE 273 >BS_yesQ [G] COG0395 ABC-type sugar transport system, permease component Length = 296 Score = 122 bits (307), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 86/275 (31%), Positives = 143/275 (52%), Gaps = 10/275 (3%) Query: 2 RTKEITGKTVLW-IFLLAFAFITLIPVVITILGSFKTNSEL-TTGATFLPSKWHFSNYAE 59 + ++ K +L+ +F A + L PV+ + SFK ++ + TT + +P + SNYAE Sbjct: 18 KAGRVSPKRILFHVFTATLAVLLLYPVIWLFVSSFKESASIFTTSHSLIPDPFILSNYAE 77 Query: 60 AWDQ---ANFSTYTVNS-LIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMF 115 W F T+ NS +IV LST+ G ++ +++ AY R+ F GKK + T+ Sbjct: 78 GWKGIAGQPFLTFIKNSAIIVGLSTI-GAVMSSAVIAYGFARIPFKGKKFWFACMMGTLM 136 Query: 116 VAVGAVVLRPQFDLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARID 175 + V++ PQ+ + KL +S +++ HA F+++ F+R IP ELDEAARID Sbjct: 137 LP-HEVLMIPQYIMFAKLDWLNSFKPIVVPQFFGHAFFIFLMIQFIRTIPEELDEAARID 195 Query: 176 GSSLGRTFWTIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLKY 235 G FW II A+F+F W E + PL++ + KPEL +++ L L Sbjct: 196 GCGRFACFWRIILPLIAPALATSAIFSFYWKWEELIQPLLY-LNKPELYPVSLAL-KLFL 253 Query: 236 GISAASQTHYMMAGACLSILPILIAYVFANKSFMQ 270 +AS M A + +S+LP+++ + K +Q Sbjct: 254 DTESASNWGAMFAMSAVSLLPVILVFFLFQKYIVQ 288 >TM0430 [G] COG0395 ABC-type sugar transport system, permease component Length = 271 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 149/273 (54%), Gaps = 10/273 (3%) Query: 9 KTVLWIFLLAFAFITLIPVVITILGSFKTNSELTT-GATFLPSKWHFSNYAEAWDQANFS 67 KT+ WIF++ + ++PV ++ SFK SE+ + T P K Y + + Sbjct: 4 KTIKWIFIVFMLVVFMLPVFYAVVSSFKPMSEIYSYPPTIFPKKPSLEGYINVIKEYDLL 63 Query: 68 TYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAVVLRPQF 127 TY N+L V+ T+LV+ M Y + + F+G + + + TMFV+ V++ P F Sbjct: 64 TYLRNTLFVATVATVITVLVSVMTGYGLAKGKFWGIRPVNSMFTMTMFVS-AQVIMVPLF 122 Query: 128 DLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARIDGSSLGRTFWTII 187 ++ L L +SLWG+I+ + +F + + +M+ IP EL E+A+IDG++ + FW I+ Sbjct: 123 VVIRSLGLINSLWGLIIPAVYTPTGMF-MAVQYMKDIPDELLESAKIDGANEWQIFWRIV 181 Query: 188 XXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLK--YGISAASQTHY 245 A+F+F WN+++LPL+ + + L TL + LA ++ YG ++ + Sbjct: 182 FPLSKPLVAALAIFSFTWRWNDFVLPLL-VVNRRNLYTLQLALATIQEEYG---GAEWNT 237 Query: 246 MMAGACLSILPILIAYVFANKSFMQ-MTAGSLK 277 ++A + L+I+P LI ++ + FM+ + AG LK Sbjct: 238 ILAFSTLTIIPTLIIFLLFQRLFMKGIMAGGLK 270 >STM0430 [K] COG2188 Transcriptional regulators Length = 239 Score = 121 bits (303), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 0/273 (0%), Positives = 0/273 (0%), Gaps = 10/273 (3%) Query: 9 KTVLWIFLLAFAFITLIPVVITILGSFKTNSELTT-GATFLPSKWHFSNYAEAWDQANFS 67 L + L S A F ++ + + Sbjct: 4 IPGDIPQYLLIKAQLQARIQSGALKSGDKLPSERELCAIFNTTRITIRESLAQLESSGLI 63 Query: 68 TYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKKIYVGIQSFTMFVAVGAVVLRPQF 127 + + + R K + T + Sbjct: 64 WRADRRGWFVTPERLWLDPTQNTNFHKLCREQGREPKTALLSGVLTTVPV-EVMEPLQLQ 122 Query: 128 DLMVKLHLHSSLWGVILILISAHASIFFILLSFMRGIPRELDEAARIDGSSLGRTFWTII 187 L + + + S + ++ Sbjct: 123 PFDQIYLLTRLRYADGRAVCYCENHCL-PARVPELLQYDLNGSLTEVYESHYNLVYTSMH 181 Query: 188 XXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLANLK--YGISAASQTHY 245 A L L + + + Sbjct: 182 LSFYPTAMPAQAAQALGVMEGRPALLLR-RLNYDQHGRVLDLDIEYWRHDS---LRIEVD 237 Query: 246 MMAGACLSILPILIAYVFANKSFMQ-MTAGSLK 277 Sbjct: 238 270 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 120 bits (301), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 84/279 (30%), Positives = 140/279 (50%), Gaps = 23/279 (8%) Query: 9 KTVLW-IFLLAFAFITLIPVVITILGSFKTNSE-LTTGATFLPSKWHFSNYAEAWDQANF 66 K+ +W I +L + +T+ P++ T+ SFK SE L+ +P + + NY + + F Sbjct: 11 KSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVFSTTPF 70 Query: 67 STYTVNSLIVSLSTVAGTLLVASMAAYVVDRMDFFGKK-IYVGIQSFTMFVAVGAVVLRP 125 + Y VNSLI+++ V L S+A Y ++ F GKK +++ M AV V + P Sbjct: 71 ARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAV--VTMIP 128 Query: 126 QFDLMVKLHL--------HSSL------WGVILILISAHASIFFILLSFMRGIPRELDEA 171 F ++ L H + W +++ + SIFF + F +P EL EA Sbjct: 129 SFLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFF-MKQFFETLPDELSEA 187 Query: 172 ARIDGSSLGRTFWTIIXXXXXXXXXXXALFTFRGAWNEYLLPLVFTMTKPELQTLTVGLA 231 ARIDG S + FW I + TF+ WN+++ PL+ + ++ T+ VGLA Sbjct: 188 ARIDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLI-VLNSQKMMTVQVGLA 246 Query: 232 NLKYGISAASQTHYMMAGACLSILPILIAYVFANKSFMQ 270 + +Y SA +MAG +S +P+L ++FA K F++ Sbjct: 247 SFQYNESA--NYGALMAGTIVSTIPVLFVFIFAQKYFVE 283 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.138 0.413 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,438,881 Number of extensions: 612548 Number of successful extensions: 2321 Number of sequences better than 1.0e-05: 145 Number of HSP's gapped: 2081 Number of HSP's successfully gapped: 145 Length of query: 278 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 173 Effective length of database: 26,268,361 Effective search space: 4544426453 Effective search space used: 4544426453 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 115 (48.9 bits)