BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0007.p (490 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic ... 92 2e-18 BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasm... 87 9e-17 all1916 [G] COG1653 ABC-type sugar transport system, periplasmic... 83 9e-16 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 74 5e-13 BH1079 [G] COG1653 ABC-type sugar transport system, periplasmic ... 70 8e-12 >PH0753 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 464 Score = 92.4 bits (228), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/321 (25%), Positives = 148/321 (46%), Gaps = 31/321 (9%) Query: 75 VQLKYWTDDRHDQEYIKELINKFNETNSDNIQVELTVMSENYTQSVDIAFSSNQAPDVLR 134 ++ W+ + + + +I F + N NI+V+ V+++ + +++ +F + APDV Sbjct: 70 IRFAGWSAGETEMKNYQRMIELFEKENP-NIKVKYEVITQMFHENILASFGAGVAPDVFY 128 Query: 135 LKSANTSEFVKKGYLAPVDSYLTDDMKTKFSSLMLDNVNRFDGKLYSLPNTGLTMRLVYN 194 + S+ F++KG L P+ + KF +L+ + +GKLY LP + L YN Sbjct: 129 VDSSWAPIFIEKGALYPISELADESFINKFYPFLLEPFKK-NGKLYGLPKDWSMLALFYN 187 Query: 195 KDIFAKAGIQNPPVSLQEMVDDAKKITEAGKSEGIYGFALNFKNPKQAFDRSIREILSLS 254 K +F +AG+ PP + E+++ AK ITE G G A+ F+R + +S + Sbjct: 188 KKLFEQAGLTKPPETWDELLEYAKIITE---KTGKPGLAIYLG----GFNRYVPVAVS-N 239 Query: 255 GYQGLGFDLK--TGQFDFAPYSQVIEYFKQMYKDGSV------LP----GAETLDIDPLR 302 G F+ FD + + ++ +Y+ G V LP E + L Sbjct: 240 GAPKPWFEKPEDASWFDNPVVRETLTWYINLYRKGKVEREKKGLPPYVVAPEDVGAGWLG 299 Query: 303 AQFAAGKIGMYLSFSTEPGVYKDQFPT---EINWAGALAPT-LDGQIKGTSEIVSAGTWL 358 F K+ M +S + DQFP +W A P +G++ ++ L Sbjct: 300 DAFGQQKVAMVISGNWMIPFLADQFPNFKYGEDWDIAPLPAGKNGRVTMVYTVI-----L 354 Query: 359 GISAKSANQDAAWKFMQYMYG 379 GI++K+ + AWKF++++ G Sbjct: 355 GINSKTKHPKEAWKFVEFILG 375 >BMEII0542 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 398 Score = 86.7 bits (213), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 78/270 (28%), Positives = 122/270 (45%), Gaps = 27/270 (10%) Query: 142 EFVKKGYLAPVDSYLTDDMKTKFSSLMLDNVNRFDGKLYSLPNTGLTMRLVYNKDIFAKA 201 +FV++G P+D Y+ D+ K +F L + + DGK Y LP + YNKD+F KA Sbjct: 82 DFVQQGIAEPLDGYMNDEFKGRFIETFL-SPSVLDGKTYGLPIAASVRAMYYNKDLFEKA 140 Query: 202 GIQNPPVSLQEMVDDAKKITEAGKSEGIYGFALNFKNPKQ------AFDRSIREILSLSG 255 GI+NPP + E+ DA KI G YGF L K + A EIL+ G Sbjct: 141 GIKNPPANWDELKADAAKIKALGGEN--YGFGLQGKEIETDVYYYYAMWSYGTEILNKDG 198 Query: 256 YQGLGFDLKTGQFDFAPYSQVIEYFKQMYKDGSVLPGAETLDIDPLRAQFAAGKIGMYLS 315 GL G + A + +K M DG PG + + ++ F GK+GM ++ Sbjct: 199 TSGLS---TPGALEAA------KLYKSMIDDGLTQPGVTSYAREDVQNLFKQGKVGMMIT 249 Query: 316 FSTEPGVYKDQFPTEINWAGALAPTLDGQIKGTSEIVSAGTWLGISAKSANQDAAWKFMQ 375 K++ P + + A P +GT + + + + S N++ AWK + Sbjct: 250 APFLSNQIKEEAPN-LKYGVAAIPAGPTGARGTYGVTDS---VIMFQNSKNKEEAWKVLD 305 Query: 376 YMY-GDEVLKTYHEKGFGIAVVPSIVEQAK 404 +++ D K +GF +P E+AK Sbjct: 306 FLFQKDWRAKFTQNEGF----LPVNKEEAK 331 >all1916 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 83.2 bits (204), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 80/333 (24%), Positives = 154/333 (46%), Gaps = 26/333 (7%) Query: 75 VQLKYWTDDRHDQEYIKELINKFNETNSDNIQVELTVMSENYTQSVDIAFSSNQAPDVLR 134 V+L W +Q+ +K+++ F E +I+V+ V+S+ Y + APDV Sbjct: 39 VKLSGWGGSPVEQKLLKQVLQDF-EAQHPHIKVKYEVISDQYMDVIKTRLIGEAAPDVFY 97 Query: 135 LKSANTSEFVKKGYLAPVDSYLTDDMK-TKFSSLMLDNVNRFDGKLYSLPNTGLTMRLVY 193 L + + + L P+D+Y+T + + F + +LDN ++ +Y P T+ L Y Sbjct: 98 LDALEAPFLMSQNVLEPLDNYITPEFDLSDFEANLLDNF-KYQNHIYGFPKDYSTLALFY 156 Query: 194 NKDIFAKAGIQNPPVSLQEMVDDAKKITEAGKSEGIYGFALNFKNPKQAFDRSI--REIL 251 NK FA AG+ +PP + E+ ++++T GK YGF + +Q + E++ Sbjct: 157 NKKAFAAAGLSSPPATWTELRTYSQQLT--GKLNK-YGFGEAPELARQVYKIKAFGGEVI 213 Query: 252 SLSGYQGLGFDLKTGQFDFAPYSQVIEYFKQMYKDGSVLPGAETLDI--DPLRAQFAAGK 309 + +GY + F VI+ ++ KD S A+ D+ + F K Sbjct: 214 NQNGYATFASEAGLRGFQL-----VIDQYQ---KDKS---SAQKSDVGTNSGSEMFGQEK 262 Query: 310 IGMYLSFSTEPGVYKDQFPTEINWAGALAPTLDGQIKGTSEIVSAGTWLGISAKSANQDA 369 + M + + ++ FP ++ +A A PT++ + KGT A +S +S ++ Sbjct: 263 VAMVIEGNWAIPYLQETFP-QLEFATAQLPTINNK-KGTMVFTVAYV---MSKQSQHKAE 317 Query: 370 AWKFMQYMYGDEVLKTYHEKGFGIAVVPSIVEQ 402 AW+ + Y+ G ++ + GF + S+ ++ Sbjct: 318 AWELISYLTGKAGMQKWTSTGFALPTRKSVSQK 350 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 73.9 bits (180), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 81/292 (27%), Positives = 124/292 (42%), Gaps = 21/292 (7%) Query: 90 IKELINKFNETNSDNIQVELTVMS-ENYTQSVDIAFSSNQAPDVLRLKSANTSEFVKKGY 148 +KEL KF T I+V++ V+ N + A +S PDV+++ + EFV+ G Sbjct: 49 LKELAQKF--TKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFVEAGA 106 Query: 149 LAPV--DSYLTDDMKTKFSSLMLDNVNRFDGKLYSLPNTGLTMRLVYNKDIFAKAGIQNP 206 L + D + +M + +FDGK Y +P T L Y D+ K G Sbjct: 107 LLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEA 166 Query: 207 PVSLQEMVDDAKKITEAGKSEGIYGFALNFKNPKQAFDRSIREILSLSGYQGLGFDLKTG 266 P + E+ D A K+++ GK +YGFA++ F + L G T Sbjct: 167 PKTWDELSDAALKLSKRGKD--MYGFAIDPNEQTTGFIFGRQNGSPLFDKDG------TP 218 Query: 267 QFDFAPYSQVIEYFKQMYKDGSVLPGAETLDIDPLRAQFAAGKIGMYLSFSTEPGVYKDQ 326 F+ P+ + Y K+GS P + L +D ++ G + M++S KD Sbjct: 219 VFNKKPFVDTVTYLDSFIKNGSA-PDTD-LGLDASQSFGGDGIVPMFMSGPWMVNTLKDT 276 Query: 327 FP-TEINWAGALAPTLDGQIKGTSEIVSAGTWLGISAKSANQDAAWKFMQYM 377 P + WA A+ P K +E G L I S +D A KFM YM Sbjct: 277 APDIDGKWATAVLPK-----KENNESSLGGANLSIFKYSNKKDDALKFMDYM 323 >BH1079 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 459 Score = 70.1 bits (170), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 155/353 (43%), Gaps = 41/353 (11%) Query: 69 TAKSGPVQLKYWTDDRHD-QEYIKELINKFNETNSDNIQVELTVMSENYTQSVDIAFSS- 126 A + +Q+++W E + EL+ +NE+ +VE+ + + + F S Sbjct: 48 VANAEKLQVEFWHGMSGGLGETLDELVATYNESQD---EVEIVPEYQGSYEELLTKFRSV 104 Query: 127 ---NQAPDVLRLKSANTSEFVKKGYLAPVDSYLTDDMKTKFSSLMLDNVNRF---DGKLY 180 + +P ++++ T ++ G++ PV ++ D S + +N+ + DG LY Sbjct: 105 GGTSDSPGLVQVFEIGTKYMIESGFITPVQEWIDKDNYD--VSQLEENILTYYSVDGDLY 162 Query: 181 SLPNTGLTMRLVYNKDIFAKAGI--QNPPVSLQEMVDDAKKITEAGKSEGIYGFALNFKN 238 S+P T L YNKD F + G+ +NPP S E+ + A+K+T ++ YGF++ Sbjct: 163 SMPFNSSTPALYYNKDAFEEVGLDPENPPRSFSEIKEAAEKLT----TDDRYGFSI---- 214 Query: 239 PKQAFDRSIREILSLSGYQGLGFDLKTGQFDFAPYS--------QVIEYFKQMYKDGSVL 290 + ++L+ G + D G+ D A + +V E+ M DG+ Sbjct: 215 --LGYGWFFEQLLATQGADYVNND--NGRTDEATEAVFNGEEGLRVFEWIYDMNNDGTF- 269 Query: 291 PGAETLDIDPLRAQFAAGKIGMYLSFSTEPGVYKDQFPTEINWAGALAPTLDGQIKGTSE 350 G + D LRA F A ++ M L + + P E+ G + D + G Sbjct: 270 -GYFGTNWDDLRAAFQAEQVAMILDSTAGIKGTVEAAPFEVG-VGFIPHADDVEPNGV-- 325 Query: 351 IVSAGT-WLGISAKSANQDAAWKFMQYMYGDEVLKTYHEKGFGIAVVPSIVEQ 402 I+ G+ W+ Q AA+ F++Y+ EV +H A+ P+ E+ Sbjct: 326 IIGGGSIWMANGISEEEQAAAFDFLKYLQTPEVQAEWHINTGYFAINPAAYEE 378 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.386 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 33,938,793 Number of extensions: 1396484 Number of successful extensions: 2057 Number of sequences better than 1.0e-05: 38 Number of HSP's gapped: 2051 Number of HSP's successfully gapped: 38 Length of query: 490 Length of database: 38,378,431 Length adjustment: 110 Effective length of query: 380 Effective length of database: 25,691,691 Effective search space: 9762842580 Effective search space used: 9762842580 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)