BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0006.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value slr1202 [G] COG1175 ABC-type sugar transport systems, permease c... 139 6e-33 SMb20232 [G] COG1175 ABC-type sugar transport systems, permease ... 125 5e-29 alr0738 [G] COG1175 ABC-type sugar transport systems, permease c... 124 1e-28 lin0218 [G] COG1175 ABC-type sugar transport systems, permease c... 122 8e-28 alr0789 [G] COG1175 ABC-type sugar transport systems, permease c... 117 2e-26 >slr1202 [G] COG1175 ABC-type sugar transport systems, permease components Length = 298 Score = 139 bits (349), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 85/275 (30%), Positives = 146/275 (53%), Gaps = 12/275 (4%) Query: 4 KWKRLGENSLFLIPSIILTVALGIYPLF--WMLRYMFYDYAGYGDALFVGLDNFRRLMRD 61 +W R LFL+P++++ A YP + L + Y+ +VGL NF RL RD Sbjct: 9 RWPRGATPYLFLLPALVMLGATVFYPALQAFSLSFTQYELDLTKAPAWVGLANFERLWRD 68 Query: 62 SLFWESVGNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVV 121 +FW + +T ++ G Y+ P + S V + Sbjct: 69 RVFWLTFRHTLLYLVGVVPLLIMLPLGLAILVNQKLRGITWFRMAYYTPVITSIVVAGIA 128 Query: 122 FYNIFNSYNGMVNTVLMKLHLVSQPVDWL-GPKHAMLTVILVAVWGAVGNYMLLFLAGLQ 180 + ++ S NG++N +L L S + WL P A+ +V++V VW +G YM+++LAGLQ Sbjct: 129 WKALYAS-NGILNQILALLGF-SDGIPWLTSPNLALWSVMVVTVWKGLGYYMVIYLAGLQ 186 Query: 181 SIPQDLYESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPI 240 +IPQ+LYE+ AIDGA+ R+ W+IT+P++ P +V +L+ I++LK +E + ++T+GGP+ Sbjct: 187 AIPQELYEAGAIDGADGWRQHWDITIPLMRPYCFLVGVLSSISALKVFEEVYIMTQGGPL 246 Query: 241 GKTEVMYLYLYKLLFPVSTGSPVAQQLGYGSAVGF 275 ++ + Y+Y+ F ++ Y SA+G Sbjct: 247 NASKTVVYYVYERAFQ-------DLEMNYASAIGL 274 >SMb20232 [G] COG1175 ABC-type sugar transport systems, permease components Length = 314 Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 92/298 (30%), Positives = 154/298 (51%), Gaps = 15/298 (5%) Query: 1 MSIKWKRLGENSLFLIPSII-LTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLM 59 +S K + LF++P + L + LG+ P+ L ++ G+G FVG N+ R+ Sbjct: 19 LSAKHREWIAGYLFVLPDALGLFIFLGV-PMALSLVLSVFEVNGFGGYSFVGARNYLRMW 77 Query: 60 RDSLFWESVGNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVIS 119 D LFW+ T ++A ++F P ++S V++ Sbjct: 78 NDPLFWKGARVTALYAAMLVPLLYVCGLGLALLVQRTDRFNAIMRSMFFAPHMVSLVVVA 137 Query: 120 VVFYNIFNSYNGMVNTVLMKLHLVSQPVDWLG-PKHAMLTVILVAVWGAVGNYMLLFLAG 178 +V+ + G+V+ + L + + LG P A++T++LV+VW +G YML+FL G Sbjct: 138 LVWQFMVVDKIGVVSRLTAALDI--GGISLLGDPNFALITIVLVSVWFLMGFYMLIFLGG 195 Query: 179 LQSIPQDLYESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKG---YESIMVIT 235 LQ IP+ YE+A IDGA A RFW ITLP+L P + VIM++++A++ G ++ I V+T Sbjct: 196 LQDIPRQYYEAAMIDGAGAIARFWFITLPLLKPTSFFVIMVSMVAAVAGAQAFDIIYVMT 255 Query: 236 EGGPIGKTEVMYLYLYKLLFPVSTGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLSR 293 +GGP T V+ +Y+Y+ F GY +A+ V + +T ++F L+R Sbjct: 256 KGGPANATSVLIVYIYQQAFGFGA-------FGYAAAMASILVVALMIVTAVFFALTR 306 >alr0738 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 124 bits (312), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 19/276 (6%), Positives = 40/276 (14%), Gaps = 21/276 (7%) Query: 30 LFWMLRYMFY-DYAGYGD----ALFVGLDNFRRLMRDSLFWESVGNTFIFAGGKXXXXXX 84 + + A L+ RL + + F Sbjct: 33 VKANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPVLLLEGFFDARDLPTISA 92 Query: 85 XXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNIFNSYNGMVNTVLMKLHLVS 144 + + L + V Sbjct: 93 QHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRP-EQAEAFYHRLTQCKNVR 151 Query: 145 QPVDWLGPKH--------AMLTVILVAVWGAVGNYMLLFLAGLQSIPQDLYESAAIDGAN 196 QPV+ + A + + G +A I Sbjct: 152 QPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIAASGGILLWPQSHFDWVRPG 211 Query: 197 AGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEVMYLYLYKLLFP 256 + + + S E G T V + Sbjct: 212 IILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEPVGYGGTWVSERDTRLGVVA 271 Query: 257 VSTGSPVAQQLGYGSAVGFASAVIVGAITGLYFFLS 292 + ++ + Sbjct: 272 -------MGYGDGYPRAAPSGTPVLVNGREVPIVGR 300 >lin0218 [G] COG1175 ABC-type sugar transport systems, permease components Length = 292 Score = 122 bits (305), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 79/265 (29%), Positives = 134/265 (50%), Gaps = 10/265 (3%) Query: 12 SLFLIPSIILTVALGIYPLFWMLRYMFYDYAGYGDALFVGLDNFRRLMRDSLFWESVGNT 71 +FL+P+++ + P+ L F D+ F G +N++RL D FW+S NT Sbjct: 14 CIFLLPNLLGFLIFIAIPILGSLGISFTDWDLVSTIHFTGFENYKRLFNDPEFWKSFRNT 73 Query: 72 FIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNIFNSYNG 131 F G +YF+P + S +S+V+ +FN G Sbjct: 74 ITFIIGYLPSVMILGLACALMLNQKIKLRPFFRAVYFLPVITSWVAVSLVWKWLFNPSYG 133 Query: 132 MVNTVLMKLHLVSQPVDWL-GPKHAMLTVILVAVWGAVGNYMLLFLAGLQSIPQDLYESA 190 ++N L L ++ P +WL P+ AM+ VI+ + W +G M+LFL GLQ+I YE+A Sbjct: 134 LINYFL-SLIGIAGP-NWLTDPQTAMIAVIITSAWKDIGFVMVLFLGGLQNISPSYYEAA 191 Query: 191 AIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEVMYLYL 250 +DGA+ R+ ++IT+P+L P V ++++I S + ++ +M++TEGGP G T + + Sbjct: 192 NMDGASKLRQLFSITIPLLTPTTFFVTIISLINSFQVFDQVMIMTEGGPSGATMTLVQNI 251 Query: 251 YKLLFPVSTGSPVAQQLGYGSAVGF 275 Y F ++GY SA+ + Sbjct: 252 YNHAFRYF-------EMGYASAMSW 269 >alr0789 [G] COG1175 ABC-type sugar transport systems, permease components Length = 359 Score = 117 bits (294), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 13/248 (5%), Positives = 34/248 (13%), Gaps = 13/248 (5%) Query: 14 FLIPSIILTVALGIYPLFWMLRYMFYDYAGYGD-----ALFVGLDNFRRLMRDSLFWESV 68 + + + Y A V +R + V Sbjct: 20 LRELAPAS---KMVAVV-KANAYGHGLLETARTLPDADAFGVARLEEALRLRAGGITKPV 75 Query: 69 GNTFIFAGGKXXXXXXXXXXXXXXXXXXXXXXXXXXXIYFMPTVISTAVISVVFYNIFNS 128 F + + TV + + Sbjct: 76 LLLEGFFDARDLPTISAQHFHTAVHNEEQLAALEEASLDEPVTVWMKLDTGMHRLGVRPE 135 Query: 129 YNGMVNTVLMKLHLVSQPVDWLGPKH-AMLTVILVAVWGAVGNYMLLFLAGLQSIPQDLY 187 + + + + + + Sbjct: 136 -QAEAFYHRLTQCKNV--RQPVNIVSHFARADEPKCGATEKQLAIFNTFCEGKPGQRSIA 192 Query: 188 ESAAIDGANAGRRFWNITLPMLAPVAQMVIMLAIIASLKGYESIMVITEGGPIGKTEVMY 247 S I W +L V+ + + + Sbjct: 193 ASGGILLWPQSHFDWVRPGIILYGVSPLEDRSTGADFGCQPVMSLTSSLIAVREHKAGEP 252 Query: 248 LYLYKLLF 255 + Sbjct: 253 VGYGGTWV 260 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.437 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,895,532 Number of extensions: 800726 Number of successful extensions: 3990 Number of sequences better than 1.0e-05: 155 Number of HSP's gapped: 3824 Number of HSP's successfully gapped: 156 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)