BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0385.0005.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 127 3e-29 ML1425 [G] COG0395 ABC-type sugar transport system, permease com... 121 2e-27 AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport... 119 6e-27 AGpA799 [R] COG0388 Predicted amidohydrolase 119 6e-27 AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport... 119 6e-27 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 127 bits (318), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 89/251 (35%), Positives = 137/251 (54%), Gaps = 16/251 (6%) Query: 52 VSGSLKTGA-EMMTGGSLLPSKLQFANYAEAWKQANFARYTWNSAFVSIMVTVGTLLVAS 110 +S + KTGA M+ +P + AN+ + ++ R+ NS V+++ T+G +L S Sbjct: 38 ISTAFKTGAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLMNSVVVAVVTTLGQMLFCS 97 Query: 111 MAAYVVDRRDFPGKS-LYVTVQASMMFISVGAIVLRPQFDLMVALHLNTTLWGVILILVS 169 MAAY R F G+ L++ A+MM + + PQF LM + G+I V Sbjct: 98 MAAYAFARIPFWGRDKLFLLYLATMM--VPAQVTMIPQFILMKQFGWLDSYAGLI---VP 152 Query: 170 AHSSTF--FMLQGFFKAIPRELDEAAMVDGSGFIRTFFRIILPLLTPGLGVAGLFAFRHA 227 A S F F+L+ F IP+EL+EAA +DG+ F ++ILPL P G+ F + Sbjct: 153 ALFSVFGTFLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQS 212 Query: 228 WNEYILPLVFTMTNPQLQTLTVGLANL--RYGSSAAMQIHLMMAGACLSILPMLLAYILA 285 WN Y+ PL+ T ++ ++ TL +GL+ L RYG++ LMMAG +S++P+L Y+ A Sbjct: 213 WNSYLWPLIVT-SSQEMATLPLGLSLLQGRYGTNYG----LMMAGVLISVIPILAVYLFA 267 Query: 286 NKTFIQVTAGS 296 K FIQ A S Sbjct: 268 QKYFIQGMAMS 278 >ML1425 [G] COG0395 ABC-type sugar transport system, permease component Length = 283 Score = 121 bits (303), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 79/252 (31%), Positives = 139/252 (55%), Gaps = 12/252 (4%) Query: 52 VSGSLKTGAEMMTGGSLLPSKLQFANYAEAWKQANFARYTWNSAFVSIMVTVGTLLVASM 111 +SGSLK E+ +LLP+ Q++NY E + F R +N+ + VTVG + S+ Sbjct: 40 LSGSLKKEGEIREP-TLLPAHPQWSNYTEVFDLIPFWRMFFNTVLYAGYVTVGQVFFCSL 98 Query: 112 AAYVVDRRDFPGK-SLYVTVQASMMFISVGAIVLRPQFDLMVALHLNTTLWGVILILVSA 170 A Y R F G+ +L+V ++M I+ PQF LM L T W +I+ + Sbjct: 99 AGYAFARLQFRGRDALFVLYLGTLMMPLTVTII--PQFILMRVLGWTDTPWAMIVPGLFG 156 Query: 171 HSSTFFMLQGFFKAIPRELDEAAMVDGSGFIRTFFRIILPLLTPGLGVAGLFAFRHAWNE 230 + ++++ FF+ +P +L+EAA++DG + ++R++LP P +GV + + + WN+ Sbjct: 157 SAFGTYLMRQFFRTLPSDLEEAAILDGCSPWQIYWRVLLPHAKPAVGVLAVLTWVNVWND 216 Query: 231 YILPLVFTMTNPQLQTLTVGLANLR--YGSSAAMQIHLMMAGACLSILPMLLAYILANKT 288 ++ PL+ N L TLT+GL +R YG+ + +MA + L ILP+++ Y +A + Sbjct: 217 FLWPLLMIQRN-SLATLTLGLVRMRGEYGTCWPV----IMATSMLIILPLVIIYTIAQRA 271 Query: 289 FIQ-VTAGSVKG 299 F++ +T + G Sbjct: 272 FVRGITVTRIGG 283 >AGpA798 [E] COG0410 ABC-type branched-chain amino acid transport systems, ATPase component Length = 373 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 13/226 (5%), Positives = 37/226 (16%), Gaps = 8/226 (3%) Query: 77 NYAEAWKQANFARYTWNSAFVSIMVTVGTLLVASMAAYVVDRRDFPGKS-LYVTVQASMM 135 +S ++ + S + + Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 136 FISVGAIVLRPQFDLMVALHLNTTLWGVILILVSAHSSTFFMLQGFFKAIPRELDEAAMV 195 I + M L + ++ ++ L + A + Sbjct: 108 AIY--NPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELA-TAQKAASLPVAEAFM 164 Query: 196 DGSGFIRTFFRIILPLLTPGLGVAGLFAFRHAWNEYILPLVFTMTNPQLQTLTVGLANLR 255 ++ G A F + ++ + VG + Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRN-QVDIGGGGLFDVGCYAIN 223 Query: 256 YGSSAAMQIH--LMMAGACLSILPMLLAYILANKTFIQ-VTAGSVK 298 + + A + Sbjct: 224 TARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 >AGpA799 [R] COG0388 Predicted amidohydrolase Length = 373 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 13/226 (5%), Positives = 37/226 (16%), Gaps = 8/226 (3%) Query: 77 NYAEAWKQANFARYTWNSAFVSIMVTVGTLLVASMAAYVVDRRDFPGKS-LYVTVQASMM 135 +S ++ + S + + Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 136 FISVGAIVLRPQFDLMVALHLNTTLWGVILILVSAHSSTFFMLQGFFKAIPRELDEAAMV 195 I + M L + ++ ++ L + A + Sbjct: 108 AIY--NPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELA-TAQKAASLPVAEAFM 164 Query: 196 DGSGFIRTFFRIILPLLTPGLGVAGLFAFRHAWNEYILPLVFTMTNPQLQTLTVGLANLR 255 ++ G A F + ++ + VG + Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRN-QVDIGGGGLFDVGCYAIN 223 Query: 256 YGSSAAMQIH--LMMAGACLSILPMLLAYILANKTFIQ-VTAGSVK 298 + + A + Sbjct: 224 TARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 >AGpA795 [E] COG4177 ABC-type branched-chain amino acid transport system, permease component Length = 373 Score = 119 bits (298), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 13/226 (5%), Positives = 37/226 (16%), Gaps = 8/226 (3%) Query: 77 NYAEAWKQANFARYTWNSAFVSIMVTVGTLLVASMAAYVVDRRDFPGKS-LYVTVQASMM 135 +S ++ + S + + Sbjct: 48 LGCAGIAAKAVIPAIQSSRLGRVVAIASRDAAKAKEMTARFGIARSYGSYEDLLADPEID 107 Query: 136 FISVGAIVLRPQFDLMVALHLNTTLWGVILILVSAHSSTFFMLQGFFKAIPRELDEAAMV 195 I + M L + ++ ++ L + A + Sbjct: 108 AIY--NPLPNHLHVPMTIKALEQGKPVLCEKPIALDAAQARELA-TAQKAASLPVAEAFM 164 Query: 196 DGSGFIRTFFRIILPLLTPGLGVAGLFAFRHAWNEYILPLVFTMTNPQLQTLTVGLANLR 255 ++ G A F + ++ + VG + Sbjct: 165 VRHHPQWKKAHALITEGRLGEVRAIQTIFSYYLDDPGNVRN-QVDIGGGGLFDVGCYAIN 223 Query: 256 YGSSAAMQIH--LMMAGACLSILPMLLAYILANKTFIQ-VTAGSVK 298 + + A + Sbjct: 224 TARFLFDAEPLRAIALMERDPVFGTDRLTSGLLAFPEGKQLAFTCS 269 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.136 0.404 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,833,929 Number of extensions: 655249 Number of successful extensions: 2597 Number of sequences better than 1.0e-05: 183 Number of HSP's gapped: 2424 Number of HSP's successfully gapped: 183 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)