BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0018.p (154 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria 112 2e-25 CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria 96 2e-20 BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria 87 1e-17 lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria 87 1e-17 PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria 79 2e-15 >CAC3689 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 112 bits (281), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 56/141 (39%), Positives = 84/141 (59%), Gaps = 5/141 (3%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M+ AY+NFDG +A+EFYAE + K + +GD+P E N+++ +++E Sbjct: 1 MAIQAYINFDGNCREAVEFYAEVFETKKPKIMVYGDMPPKEGAKFNEETKNLVLNAALEV 60 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G IM SDI+P MK LV GNNI + ++I+D +L+ FN L G V+M L T Sbjct: 61 KGSTIMFSDIVPGMK-----LVVGNNISLVVIINDIDELKLIFNRLKEKGTVLMELQETF 115 Query: 121 WSSCFGMLVDKFGVNWKFNSD 141 WS C+G +VDKFG+ W+ + + Sbjct: 116 WSKCYGYVVDKFGIEWQLSYE 136 >CAC1525 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 95.9 bits (237), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 75/141 (53%), Gaps = 5/141 (3%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M+ Y++F+G +A+EFY+ A K V + ++P P + ++ +I SSI Sbjct: 1 MNLQVYISFNGNCRKALEFYSRVFEAKINKTVTYKELPSHPKVAIEKDVEELIAYSSIIL 60 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G + M D+ P M L +GNN+ + +V + +LE FN L G+V M L T Sbjct: 61 KGNYLNMVDVFPGMP-----LTRGNNVSLTIVSNKSNELEVLFNKLKEDGNVNMELQKTY 115 Query: 121 WSSCFGMLVDKFGVNWKFNSD 141 WS C+G L DKFG+ W FN + Sbjct: 116 WSRCYGSLTDKFGIEWHFNCE 136 >BH0850 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 148 Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 45/140 (32%), Positives = 72/140 (51%) Query: 6 YLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEFAGGKI 65 YL DG + AIEFY +ALNA + +GD+P+ PN PM ++I+ + ++ + Sbjct: 8 YLMLDGDGQAAIEFYQDALNAEVITIQTYGDLPEQPNSPMASVNKDLILHAHLKLGEMDL 67 Query: 66 MMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTPWSSCF 125 M+SD + G+ + I L ++ + E F LA GG I PL T +S + Sbjct: 68 MISDQCLDVDPERFPQHSGSPVTIALTTNNVEMTTEVFQKLASGGEEIAPLEKTFFSPLY 127 Query: 126 GMLVDKFGVNWKFNSDADQF 145 G + DKFG+ W ++ + F Sbjct: 128 GQVTDKFGITWHVSTQEESF 147 >lin1207 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 135 Score = 86.7 bits (213), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 48/139 (34%), Positives = 76/139 (54%), Gaps = 6/139 (4%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M+ YLNF + AI FY E + +G+I + P+ ++ +++M +S+ Sbjct: 1 MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGEI-ESAEEPIEDSLKDLVMNASLVL 59 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 G K+M SD+ SM L G+NI + + D+ KL + F+ LA GG++IMPL T Sbjct: 60 DGVKVMFSDVPKSMP-----LTFGDNITLVIDTTDEIKLTKQFHQLAEGGNIIMPLGKTF 114 Query: 121 WSSCFGMLVDKFGVNWKFN 139 WS +G + DKFG+ W+ N Sbjct: 115 WSEKYGQVTDKFGIGWQLN 133 >PA1353 [S] COG2764 Uncharacterized protein conserved in bacteria Length = 137 Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 49/144 (34%), Positives = 73/144 (50%), Gaps = 7/144 (4%) Query: 1 MSAIAYLNFDGIAEQAIEFYAEALNANEVKKVKFGDIPQDPNYPMPENELNMIMESSIEF 60 M + YL F+G +A Y + L + FGD P+ + +P + + IM + + Sbjct: 1 MQIVPYLIFNGNCREAFSCYHQHLGGTLEAMLPFGDSPECGD--IPADWKDKIMHARLVV 58 Query: 61 AGGKIMMSDILPSMKAVTGELVQGNNILINLVIDDKQKLEEYFNHLALGGHVIMPLSNTP 120 +M SD P A E ++G +I +N +D K + E FN LA GG V MPL T Sbjct: 59 GSFALMASDNHP---AYPYEGIKGCSISLN--VDSKAEAERLFNALAEGGSVQMPLGPTF 113 Query: 121 WSSCFGMLVDKFGVNWKFNSDADQ 144 W++ FGM D+FGV W N + D+ Sbjct: 114 WAASFGMFTDRFGVAWMVNCEQDR 137 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.136 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 11,590,410 Number of extensions: 483738 Number of successful extensions: 797 Number of sequences better than 1.0e-05: 9 Number of HSP's gapped: 792 Number of HSP's successfully gapped: 9 Length of query: 154 Length of database: 38,378,431 Length adjustment: 97 Effective length of query: 57 Effective length of database: 27,191,033 Effective search space: 1549888881 Effective search space used: 1549888881 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 111 (47.4 bits)