BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0383.0013.p
         (72 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z5888 [K] COG1396 Predicted transcriptional regulators                 51   4e-07
BH0944 [K] COG1396 Predicted transcriptional regulators                47   7e-06

>Z5888 [K] COG1396 Predicted transcriptional regulators
          Length = 154

 Score = 51.2 bits (121), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 37/62 (59%)

Query: 1  MDKEILKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESL 60
          M   + KL G R++ LR   G+SQEA  ++ GF  SY+ +IERG  N SL  +  +A +L
Sbjct: 1  MKMTLRKLFGQRVKELRIATGMSQEAFADRCGFARSYMSRIERGGSNASLDAIEVLANAL 60

Query: 61 EV 62
           V
Sbjct: 61 SV 62


>BH0944 [K] COG1396 Predicted transcriptional regulators
          Length = 107

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 22/57 (38%), Positives = 37/57 (64%)

Query: 6  LKLVGTRIRALRKERGLSQEALGEKGGFHFSYIGQIERGEKNVSLLNLHKIAESLEV 62
          L+ +G++IR+LRK    +   L ++ G   +Y+ Q+ERGE NVS+  L K+ ++L V
Sbjct: 4  LQYIGSQIRSLRKGNKWTLSELSKRSGVTLNYLAQLERGEVNVSVNKLDKVLQALNV 60


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.139    0.372 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 4,393,407
Number of extensions: 177943
Number of successful extensions: 341
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 2
Length of query: 72
Length of database: 38,378,431
Length adjustment: 43
Effective length of query: 29
Effective length of database: 33,419,069
Effective search space: 969153001
Effective search space used: 969153001
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 109 (46.6 bits)