BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0383.0011.p
         (395 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0787 [S] COG3861 Uncharacterized protein conserved in bacteria     116   5e-26
CAC0786 [S] COG3861 Uncharacterized protein conserved in bacteria      74   5e-13
DR1314 [S] COG3861 Uncharacterized protein conserved in bacteria       73   9e-13
all4051 [S] COG3861 Uncharacterized protein conserved in bacteria      61   4e-09
all5315 [S] COG3861 Uncharacterized protein conserved in bacteria      54   6e-07

>CAC0787 [S] COG3861 Uncharacterized protein conserved in bacteria
          Length = 149

 Score =  116 bits (291), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 57/111 (51%), Positives = 88/111 (79%)

Query: 271 QLDVSKNKVQTGEVNVRKEIVEEQKTINVPVSHEEIVIERRSVNHDSTAEPVGAGETIRI 330
           +LD++K+KVQ GEV + KEI+EE K ++VPV  EE+VIER+++N++++  P+   E+I+I
Sbjct: 31  ELDINKDKVQKGEVELGKEIIEEHKAVDVPVKREEVVIERKALNNEASDSPITDEESIKI 90

Query: 331 PVSEEQVEVNKNTVVTGEVDVHKREIQETEQVKDTVKREEARVDKTGNVKV 381
           PVSEE+V V K+TV+T EV  HK ++++T  V +T+KREEARV++TG+  V
Sbjct: 91  PVSEEKVNVGKHTVLTSEVSAHKHDVEDTHHVDETLKREEARVNRTGDADV 141


>CAC0786 [S] COG3861 Uncharacterized protein conserved in bacteria
          Length = 123

 Score = 73.6 bits (179), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/111 (36%), Positives = 67/111 (60%), Gaps = 6/111 (5%)

Query: 271 QLDVSKNKVQTGEVNVRKEIVEEQKTINVPVSHEEIVIERRSVNHDSTAEPVGAGETIRI 330
           QLD++K  +QT +V   KE    QKT  +PV  EE+VIE+     D         E IRI
Sbjct: 16  QLDIAKQWIQTEDVKAYKETSSIQKTFTIPVEREELVIEKIPTASD------DKKEVIRI 69

Query: 331 PVSEEQVEVNKNTVVTGEVDVHKREIQETEQVKDTVKREEARVDKTGNVKV 381
           P+SEE+V  +K+ ++  +V ++K +I++   +++T+K+E  +++  GN KV
Sbjct: 70  PLSEEEVNFSKHRIILEDVSIYKNQIEDVRHIEETLKKENPKIETFGNAKV 120


>DR1314 [S] COG3861 Uncharacterized protein conserved in bacteria
          Length = 330

 Score = 72.8 bits (177), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 44/126 (34%), Positives = 73/126 (57%), Gaps = 3/126 (2%)

Query: 271 QLDVSKNKVQTGEVNVRKEIVEEQKTINVPVSHEEIVIERRSVNHDSTAEPVGAGE---T 327
           +L V+K++ + G V + K I   Q+T++VP+  EE+VIER +V      E    GE   T
Sbjct: 202 RLVVNKDRFKAGSVQIGKRIETRQETVSVPLQREEVVIERHAVTDGRAVEGAVLGEGHQT 261

Query: 328 IRIPVSEEQVEVNKNTVVTGEVDVHKREIQETEQVKDTVKREEARVDKTGNVKVNNNSGV 387
           + + +  E+  ++K   VT EV V KR + ET+QV +TV RE   V++TG+V+    + +
Sbjct: 262 MSVDLEAERANISKQAYVTEEVSVGKRAVTETQQVTETVGREVLDVNQTGDVRTTEGTAL 321

Query: 388 LRDHSR 393
             D ++
Sbjct: 322 TDDTTK 327


>all4051 [S] COG3861 Uncharacterized protein conserved in bacteria
          Length = 281

 Score = 60.8 bits (146), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/117 (36%), Positives = 64/117 (54%), Gaps = 5/117 (4%)

Query: 271 QLDVSKNKVQTGEVNVRKEIVEEQKTINVPVSHEEIVIERRS-VNHDSTAEP----VGAG 325
           +L  +K++V+TGEV V K I  E   + VP+  E +VIER +  + D+  +P       G
Sbjct: 155 RLIANKHRVKTGEVAVGKHIETENARVAVPIQRERVVIERAAPTSPDTIVDPKEVKFQQG 214

Query: 326 ETIRIPVSEEQVEVNKNTVVTGEVDVHKREIQETEQVKDTVKREEARVDKTGNVKVN 382
           E  RI + EE  E+ K   V  EV V K    +T + +D ++REE  +D  GN+ VN
Sbjct: 215 EVARIELYEETPEIRKEAFVREEVRVRKVVESDTVEAQDVIRREELDIDTAGNLLVN 271


>all5315 [S] COG3861 Uncharacterized protein conserved in bacteria
          Length = 288

 Score = 53.5 bits (127), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 40/113 (35%), Positives = 67/113 (59%), Gaps = 11/113 (9%)

Query: 271 QLDVSKNKVQTGEVNVRKEIVEEQKTINVPVSHEEIVIER-------RSVNHDSTAEP-V 322
           +L  +K++V+TGEV+V K +  E   ++VPV  E ++IER       RSV   S AE   
Sbjct: 169 RLVANKSRVKTGEVSVGKHVENETARVSVPVEKERVIIERTTPGEGARSV---SPAEADF 225

Query: 323 GAGETIRIPVSEEQVEVNKNTVVTGEVDVHKREIQETEQVKDTVKREEARVDK 375
             GE  R+ + EE  +++K  V+  EV ++K   ++T + ++T++REE  +DK
Sbjct: 226 REGEVTRVDIYEETPDIHKEAVLREEVKINKVVERDTVEAEETLRREELDIDK 278


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.307    0.126    0.337 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 22,810,402
Number of extensions: 883834
Number of successful extensions: 1768
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 1763
Number of HSP's successfully gapped: 6
Length of query: 395
Length of database: 38,378,431
Length adjustment: 108
Effective length of query: 287
Effective length of database: 25,922,359
Effective search space: 7439717033
Effective search space used: 7439717033
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 117 (49.7 bits)