BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0383.0009.p (282 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins 131 1e-30 BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins 91 1e-18 lin0157 [K] COG2207 AraC-type DNA-binding domain-containing prot... 79 7e-15 BS_ybbB_1 [K] COG2207 AraC-type DNA-binding domain-containing pr... 78 1e-14 BH1123 [T] COG4753 Response regulator containing CheY-like recei... 77 3e-14 >SP1899 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 286 Score = 131 bits (329), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 83/277 (29%), Positives = 139/277 (50%), Gaps = 14/277 (5%) Query: 14 GNPDLHLHYWGREECAPGHSVGPGVRDLYKIHFIHAGTGRVTVGRETHMLQPGQAFLTYP 73 G DL L ++G EEC P +S GP +RD Y +H+I G G+ + L+ G FL P Sbjct: 10 GTIDLALSFYGYEECTPNYSFGPAIRDTYVLHYITKGQGKFHYKGKIVDLKEGDFFLLKP 69 Query: 74 HIVTHYAADMDQPWTYSWVAFTGEEIGYLLSKTSLSPEHPVFPMD---DSLMPALYDRLS 130 +T Y AD +PW Y W+ TG + + + +S + + + L + Sbjct: 70 EELTFYQADSKEPWAYYWLGITGGKAPDYFALSQISDQSYLIQSETCHTQTTAKLISDIV 129 Query: 131 AAADYKDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLPRQKSI------YVEQCLHYLHA 184 A S +L IM + L+ + A P ++K+I Y+E C + + Sbjct: 130 RFAQITKSSELAQLHIMGQLHELMFHLGTIA----PNQKKKNISSTHQLYLE-CKRLIDS 184 Query: 185 HYCENVTVECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELLTETPCTIGEI 244 HY +++T++ ++ L + R YLS++FK+ L P++YLL R+ +A +LL T +I I Sbjct: 185 HYPQSLTIQDLAKELSVHRSYLSSVFKEFNTLSPKEYLLYVRMHRARQLLENTQESIKVI 244 Query: 245 SRSVGYQDPLLFSRMFKKVKGCSPKEYRIRHAGNDIV 281 + SVG+ DPL FS+ +K+ +P R ++ +V Sbjct: 245 AYSVGFSDPLHFSKAYKQYFNQTPSHTRKEYSQYQLV 281 >BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 278 Score = 91.3 bits (225), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/106 (40%), Positives = 66/106 (62%) Query: 167 LPRQKSIYVEQCLHYLHAHYCENVTVECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFR 226 L R+ + +EQ + Y+H HY E +TV+ ++ + K S LFKK +G+ P YL+ +R Sbjct: 162 LNRESQLVIEQVVEYIHHHYMEPMTVKKLADMSGMGVKPFSYLFKKYIGMFPIDYLIQYR 221 Query: 227 IAKACELLTETPCTIGEISRSVGYQDPLLFSRMFKKVKGCSPKEYR 272 + +A LL + +I +I+ S+GY D L FSR+FKK GCSP +R Sbjct: 222 LKRAKNLLVSSNSSIADIAESIGYLDALYFSRLFKKHIGCSPTAFR 267 >lin0157 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 277 Score = 79.0 bits (193), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 50/164 (30%), Positives = 81/164 (49%), Gaps = 15/164 (9%) Query: 118 DDSLMPALYDRLSAAAD-YKDSLDLPLKAIMYEFFGLLVRMVPAAAHPIPLP-------- 168 D+S + ++ ++ D K DL LKA F L+ V A P L Sbjct: 112 DESAILSISKQIIEEKDAEKPGYDLILKA----FVMQLIIHVLREATPEQLENNGVKLST 167 Query: 169 --RQKSIYVEQCLHYLHAHYCENVTVECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFR 226 +QK + V + +HY+ H+ E+V++ +S ++ + Y+S +FK+ G P YL+ R Sbjct: 168 DEQQKQMLVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEETGESPINYLIKIR 227 Query: 227 IAKACELLTETPCTIGEISRSVGYQDPLLFSRMFKKVKGCSPKE 270 + +A ELL T+ + + VGY D FS++FKK G P E Sbjct: 228 LTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFKKYYGFPPSE 271 >BS_ybbB_1 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 364 Score = 78.2 bits (191), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 14/243 (5%), Positives = 38/243 (15%), Gaps = 21/243 (8%) Query: 40 DLYKIHFIHAGTGRVTVGRETHMLQ--------PGQAFLTYPHIVTHYAADMDQPWTYSW 91 + + + A MD Sbjct: 29 FEHGAMPAAINLPLMNNDERAAVGTCYKQQGSDAALALGHKLVAGEIRQQRMDAWRAA-- 86 Query: 92 VAFTGEEIGYLLSKTSLSPEHPVFPMDDSLMPALYDRLSA-AADYKDSLDLPLKAIMYEF 150 + I S + Y + + + + + Sbjct: 87 CLQNPQGILCCARGGQRSH---IVQSWLHAAGIDYPLVEGGYKALRQTAIQATIELAQKP 143 Query: 151 FGLLVRMVPAAAHPIPLPRQKSIY--VEQCLHYLHAHYCENVTVECMSSSLKLDRKYLSA 208 L+ + S L+A Sbjct: 144 IVLIGGCTGSG-----KTLLVQQQPNGVDLEGLARHRGSAFGRTLQPQLSQASFENLLAA 198 Query: 209 LFKKTVGLPPQQYLLNFRIAKACELLTETPCTIGEISRSVGYQDPLLFSRMFKKVKGCSP 268 KT + + ++ C ++++ F +++ Sbjct: 199 EMLKTDARQNLRLWVLEDESRMIGSNHLPECLRERMTQAAIAVVEDPFEIRLERLNEEYF 258 Query: 269 KEY 271 Sbjct: 259 LRM 261 >BH1123 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 526 Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/96 (36%), Positives = 57/96 (59%) Query: 175 VEQCLHYLHAHYCENVTVECMSSSLKLDRKYLSALFKKTVGLPPQQYLLNFRIAKACELL 234 +EQ + Y+ H EN+T++ ++ L + R YL +FKK VG + Y+ R+ KA +++ Sbjct: 426 IEQVMIYIEKHLAENITLQDIADELYISRNYLGQIFKKVVGESFKNYVTRLRMEKAKKMI 485 Query: 235 TETPCTIGEISRSVGYQDPLLFSRMFKKVKGCSPKE 270 E I E+S VGY +P F+ MFKK G +P++ Sbjct: 486 QEGNFLIYEVSEKVGYVNPAYFTTMFKKYTGYTPRD 521 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.323 0.139 0.441 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,654,390 Number of extensions: 959914 Number of successful extensions: 2151 Number of sequences better than 1.0e-05: 66 Number of HSP's gapped: 2135 Number of HSP's successfully gapped: 66 Length of query: 282 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 177 Effective length of database: 26,268,361 Effective search space: 4649499897 Effective search space used: 4649499897 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 115 (48.9 bits)