BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0382.0019.p
         (128 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

HI0186 [K] COG0789 Predicted transcriptional regulators                94   4e-20
lin0818 [K] COG0789 Predicted transcriptional regulators               91   4e-19
CAC3507 [K] COG0789 Predicted transcriptional regulators               91   6e-19
L0247 [K] COG0789 Predicted transcriptional regulators                 88   3e-18
lin1622 [K] COG0789 Predicted transcriptional regulators               86   1e-17

>HI0186 [K] COG0789 Predicted transcriptional regulators
          Length = 135

 Score = 94.0 bits (232), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 74/114 (64%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M Y+    A+K G+S YTLR+Y++EG+LP V RDE+GNR F D+DL+ +SL+ CLK+TGM
Sbjct: 1   MTYTTAKAAEKIGISAYTLRFYDKEGLLPNVGRDEYGNRRFTDKDLQWLSLLQCLKNTGM 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYF 114
            + +IK+F   +  G + + ++  L +     +  +I   + +   +E+K+A++
Sbjct: 61  SLKDIKRFAECTIIGDDTIEERLSLFENQTKNVKCQIAELKRYLDLLEYKLAFY 114


>lin0818 [K] COG0789 Predicted transcriptional regulators
          Length = 129

 Score = 90.9 bits (224), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 43/122 (35%), Positives = 79/122 (64%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M  +IK  ++ +GLS +T+RYYEREG++P +ARD++ NR F ++ L  + L+ CL+ TGM
Sbjct: 1   MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDNDALHWLELLTCLRVTGM 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFASLERE 120
           P+A+ K+ + L++ G E + ++  +L+ H+  +  +        +KIE K+A +  LE++
Sbjct: 61  PLAKQKEIVELTKCGDETVSERIAVLKEHQQDMYRRQAELDRAFKKIEKKLACYEELEKD 120

Query: 121 AQ 122
            +
Sbjct: 121 VK 122


>CAC3507 [K] COG0789 Predicted transcriptional regulators
          Length = 126

 Score = 90.5 bits (223), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 41/119 (34%), Positives = 79/119 (66%)

Query: 2   GYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGMP 61
           G+SIK +A+ +GLS++TLR+YE++ ++  ++RDE+G R + D D+E I  +  +K+TGMP
Sbjct: 4   GFSIKEVAKLTGLSEHTLRFYEKQQLIKNISRDENGYRIYSDFDIEWIHFLIKVKNTGMP 63

Query: 62  IAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFASLERE 120
           + E++++  L  +G   LP++ K+L  H+ +++ +I   +    KI+ K+  +  L +E
Sbjct: 64  LNELQKYSELMAQGNPTLPEREKMLLQHRKRVENEISDLEITLTKIDEKLDRYHHLMQE 122


>L0247 [K] COG0789 Predicted transcriptional regulators
          Length = 144

 Score = 88.2 bits (217), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 43/114 (37%), Positives = 69/114 (60%)

Query: 3   YSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGMPI 62
           Y+I  I++K  +S   +RYY++EG+LP   R++ G R F D+DL  I +I CLK +G+PI
Sbjct: 4   YTIGDISRKLNVSNDAVRYYDKEGLLPFAKRNKAGRREFTDDDLGYIEVIDCLKKSGIPI 63

Query: 63  AEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFAS 116
            +I QFI    EG   L ++   ++ H+ Q++EKIK  +     +  KI Y+ +
Sbjct: 64  KDIAQFIDWCMEGDSTLDERLDFMKTHEEQLEEKIKVLEMNLAFLRWKIWYYQT 117


>lin1622 [K] COG0789 Predicted transcriptional regulators
          Length = 145

 Score = 86.3 bits (212), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 37/117 (31%), Positives = 74/117 (63%)

Query: 1   MGYSIKTIAQKSGLSQYTLRYYEREGVLPVVARDEHGNRCFHDEDLELISLICCLKDTGM 60
           M Y    +A+K G++  TL YYE+ G+LP + R+  GNR + +E++E + +I  +++ G+
Sbjct: 1   MEYIAHEVAEKLGITVPTLHYYEKAGLLPSIKRNSVGNRIYTEENIEWLYMIVLMREVGV 60

Query: 61  PIAEIKQFIALSREGVEALPDQRKLLQAHKLQIDEKIKFFQSFAQKIEHKIAYFASL 117
           PI EI+ +I L  +G E +P++ +L+  +K  ++EK+K  Q+  + +  K+ ++  +
Sbjct: 61  PIREIRSYIQLLLKGPETIPERYQLVTQYKQSVEEKMKAMQTSLKWLGAKVNFYQEM 117


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.321    0.136    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 8,811,480
Number of extensions: 309940
Number of successful extensions: 685
Number of sequences better than 1.0e-05: 39
Number of HSP's gapped: 700
Number of HSP's successfully gapped: 39
Length of query: 128
Length of database: 38,378,431
Length adjustment: 94
Effective length of query: 34
Effective length of database: 27,537,035
Effective search space: 936259190
Effective search space used: 936259190
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)