BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0018.p (343 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0794 [G] COG4209 ABC-type polysaccharide transport system, per... 222 6e-58 SP0090 [G] COG4209 ABC-type polysaccharide transport system, per... 218 1e-56 BH2112 [G] COG4209 ABC-type polysaccharide transport system, per... 164 2e-40 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 147 3e-35 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 143 5e-34 >BH0794 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 312 Score = 222 bits (566), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 125/305 (40%), Positives = 189/305 (61%), Gaps = 5/305 (1%) Query: 44 LHELVHNRVXXXXXXXXXXXXXVNSYFPMVGVYYAFTQFDFN-----SGMFDAPFVGFKN 98 L + NR+ V Y PM G AF F F+ + ++ + +VG +N Sbjct: 8 LKNIYDNRIWLLMVLPGLIWLLVLKYIPMFGQIIAFKDFRFHPDGFFASLYHSEWVGLEN 67 Query: 99 FEFLWKSGTLVKLTLNTIGYNLAFILLGNVLAIVCAILLSELRVKWFKKLTQSIMFLPYF 158 F+FL+ + +T NT+ YN+ FI+LG VLA+ AI++SEL + K+ Q+ M P+F Sbjct: 68 FQFLFSTNDAFIITRNTVLYNVVFIVLGLVLAVAVAIIISELTNQKLAKIYQTGMLFPHF 127 Query: 159 VSFVILSVIVYNVFNYDNGFLNTLLAQFGAGPVDVYNKPGVWIFLIIVFYLWKNLGYSMV 218 +S+V++S V+ + D G NT+L+ PV YN+PG W + II WK +G+S + Sbjct: 128 LSWVVVSYFVFTFLSIDRGLFNTILSAINIDPVAWYNEPGYWPYFIITISQWKGVGFSSI 187 Query: 219 IYLASITGISDEYYEAAKIDGAHIFQRIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFY 278 +YLA+I I YYEAA IDGA +Q+I ++T+PM+ I+L + ++GSI F LFY Sbjct: 188 VYLAAIVAIDRTYYEAAIIDGASKWQQIRHVTIPMIMPLIIILTILNIGSIFSADFGLFY 247 Query: 279 QLIGNNGVLYNTTDILDTYVFRSLKVTFDIGMATAAGLYQSLFGFILIMTVNYIIRKIND 338 Q+ ++G LY+ T+++DTYV+R L DIGM+TAAGLYQ+ GF+LI+ NYI+RKI++ Sbjct: 248 QVPRDSGPLYSVTNVIDTYVYRGLMTMGDIGMSTAAGLYQATVGFVLILITNYIVRKIDE 307 Query: 339 DYALF 343 + ALF Sbjct: 308 ENALF 312 >SP0090 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 218 bits (554), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/280 (43%), Positives = 167/280 (59%), Gaps = 5/280 (1%) Query: 69 YFPMVGVYYAFTQFDFNSGMF-----DAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFI 123 Y P+ G AF + S F ++ +VG NF FL+ S +T NT+ YNL FI Sbjct: 40 YIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRDAFIITRNTVLYNLGFI 99 Query: 124 LLGNVLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLL 183 LG V+++ AI+LSELR K K+ Q+ M PYF+S+VI+S N D G N LL Sbjct: 100 FLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFLNIDKGVFNHLL 159 Query: 184 AQFGAGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIF 243 G V+ Y G+W +L++ +WK GYS V+Y A+I GI YYEAA +DGA + Sbjct: 160 ESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYYEAATVDGASKW 219 Query: 244 QRIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRSLK 303 QRI +T+P L VL + ++G+I + F LFYQ+ N G LYN T++LD YVF L Sbjct: 220 QRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHNAGQLYNVTNVLDVYVFNGLT 279 Query: 304 VTFDIGMATAAGLYQSLFGFILIMTVNYIIRKINDDYALF 343 T DIGMA AAGLYQS+ G IL++ N + R+++ + ALF Sbjct: 280 QTADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF 319 >BH2112 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 337 Score = 164 bits (415), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 96/277 (34%), Positives = 167/277 (60%), Gaps = 14/277 (5%) Query: 69 YFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGNV 128 Y P+ G AF F +FD + GFK+F FL+ ++ NT+ +L ++LG V Sbjct: 64 YVPLYGWSIAFQDFRPARPIFDQDWAGFKHFTFLFTDPRFFEVLRNTLAMSLINLVLGFV 123 Query: 129 LAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFGA 188 AI AILL+ELR FK++ Q+I ++P+F+S+V+ + +V + +NG +N +L + G Sbjct: 124 TAIGLAILLNELRNLTFKRVVQTISYMPHFLSWVVAAGLVSAALSIENGIINIVLMKLG- 182 Query: 189 GPVDVYNKPGVWIFLIIVFY-------LWKNLGYSMVIYLASITGISDEYYEAAKIDGAH 241 + ++P +W+ + F+ +WKN+G++ +IYLA+IT I E YEAA+IDGA Sbjct: 183 ----MISEPIMWLGVGEYFWGIIGASDVWKNVGWNTIIYLAAITMIDTEQYEAAEIDGAT 238 Query: 242 IFQRIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRS 301 QRIWYIT+P ++ ++LL+ +LG I++ F+ Y L+ N + + + LD +V R Sbjct: 239 RLQRIWYITLPGMRPVIVILLIMNLGYILESGFEAQYLLM--NPMNMDFAENLDIFVLRY 296 Query: 302 LKVTFDIGMATAAGLYQSLFGFILIMTVNYIIRKIND 338 + +ATAAG+++++ FI + + N+I +++ + Sbjct: 297 GINMGNFSLATAAGIFKTVVSFIFLFSANHIAKRLGE 333 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 147 bits (370), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 89/278 (32%), Positives = 162/278 (58%), Gaps = 12/278 (4%) Query: 68 SYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGN 127 +YFP+ G AF F F+ +VG ++F L++ + NT+ ++ +++G Sbjct: 45 NYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGF 104 Query: 128 VLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFG 187 + I+ A+LL+E+R FK+ Q++ +LP+FVS+V+++ IV + + D G +N LL FG Sbjct: 105 TMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFG 164 Query: 188 --AGPVDVYNKPGVWIFLIIVFY-LWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIFQ 244 PV K G W ++I+ LWK +G++ +I+LA++ GI + YEAAK+DGA ++ Sbjct: 165 FVDQPVQFMAK-GEWFWVIVTLSDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWR 223 Query: 245 RIWYITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRSLKV 304 +IW+IT+P ++ T +V+L+ S+G +M F+ Q + N ++ + +++LD Y +L Sbjct: 224 QIWHITLPGIRPTILVILILSIGHLMAIGFE--KQFLLGNPLVVDYSEVLDLY---ALNY 278 Query: 305 TFDIGM---ATAAGLYQSLFGFILIMTVNYIIRKINDD 339 +G TA G++ S+ IL+ N I ++ + Sbjct: 279 GLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQ 316 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 143 bits (360), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 85/260 (32%), Positives = 150/260 (57%), Gaps = 2/260 (0%) Query: 68 SYFPMVGVYYAFTQFDFNSGMFDAPFVGFKNFEFLWKSGTLVKLTLNTIGYNLAFILLGN 127 Y PM G+ AF + G + +VG ++F +++ ++ NT+ ++ ++ G Sbjct: 45 QYGPMFGIVMAFQDYKPWLGFTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGL 104 Query: 128 VLAIVCAILLSELRVKWFKKLTQSIMFLPYFVSFVILSVIVYNVFNYDNGFLNTLLAQFG 187 ++ I+ A+LL+E+ K+ Q+I++LPYF+S+VIL I+ +V + D G +N L FG Sbjct: 105 IVPIIVALLLNEMYQMVVKRTVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFG 164 Query: 188 AGPVDVYNKPGVWIFLIIVFYLWKNLGYSMVIYLASITGISDEYYEAAKIDGAHIFQRIW 247 P+ + +++ LWK G++ +++LA+IT ++ YEAA +DGA+ +++ Sbjct: 165 IDPIFFLGSNDWFRTTVVISDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTL 224 Query: 248 YITVPMLKSTFIVLLLFSLGSIMKGQFDLFYQLIGNNGVLYNTTDILDTYVFRSLKVTFD 307 +IT+P + IV+ SLG+I+ FD + L N ++Y T DI+DTYV+R V D Sbjct: 225 HITLPAMLPIIIVVATLSLGNILNAGFDQIFNLY--NPLVYQTGDIIDTYVYRVSLVNGD 282 Query: 308 IGMATAAGLYQSLFGFILIM 327 TA GL++SL +LI+ Sbjct: 283 FSYGTAVGLFKSLISLVLII 302 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.330 0.145 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 22,237,618 Number of extensions: 863790 Number of successful extensions: 2653 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 2545 Number of HSP's successfully gapped: 148 Length of query: 343 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 236 Effective length of database: 26,037,693 Effective search space: 6144895548 Effective search space used: 6144895548 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 116 (49.3 bits)