BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0017.p (305 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0795 [G] COG0395 ABC-type sugar transport system, permease com... 242 7e-64 SP0091 [G] COG0395 ABC-type sugar transport system, permease com... 232 5e-61 lin2116 [G] COG0395 ABC-type sugar transport system, permease co... 221 1e-57 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 189 4e-48 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 183 4e-46 >BH0795 [G] COG0395 ABC-type sugar transport system, permease component Length = 322 Score = 242 bits (617), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 123/280 (43%), Positives = 176/280 (62%), Gaps = 4/280 (1%) Query: 29 ILGSLA--CLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEGYKTVFTFPDEVLRAYXX 86 ++G+ A C+ PF+ +I SLT+ S+ +GY +IP+++S + Y+ ++ EV RAY Sbjct: 42 LIGTFAFLCIFPFIYVIIISLTSEQSLAMNGYRIIPSEWSFDAYRYLWQMRSEVFRAYGV 101 Query: 87 XXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTLFGGGLVPWYIMMTKYLH 146 Y ++RK F YR F+F +FT LF GG+VP+YI+MT++L Sbjct: 102 TIFITVVGTLMSVSIIALYAYAISRKQFLYRKLFTFIAFFTMLFSGGMVPFYIVMTQFLG 161 Query: 147 LTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGAGDFKIYWRIVLQLSMPG 206 L +S ALI P + F II+M+ F + +VPE + ESA+IDGAG+F+I+++IVL LS+PG Sbjct: 162 LKNSVWALILPMAVNAFYIIIMRTFFQRSVPEAILESARIDGAGEFRIFFKIVLPLSIPG 221 Query: 207 IATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAAFIAN--MGAGTGVSLGS 264 IAT+ LF LAYWNDWF++ LFI+DP LQ L + N+ FI M + +L Sbjct: 222 IATIALFSTLAYWNDWFNALLFIDDPKLVPLQSLLMRIENNLDFIRQNAMLSSQNSALLD 281 Query: 265 DLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVK 304 +P +S +MAM +I T PI YPF Q+YFVKGLTIG VK Sbjct: 282 SIPQDSARMAMVVIATLPIALSYPFFQKYFVKGLTIGGVK 321 >SP0091 [G] COG0395 ABC-type sugar transport system, permease component Length = 307 Score = 232 bits (592), Expect = 5e-61, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 178/297 (59%), Gaps = 8/297 (2%) Query: 8 SMHIKDDHYTRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSL 67 S K D + ++ GL +L+C++PF+ +I S+T S+++ GY P+QF L Sbjct: 18 SFSKKADIFFSIISGLI-------ALSCILPFVFVIIISVTDEKSLLQYGYSFFPSQFGL 70 Query: 68 EGYKTVFTFPDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFT 127 +G++ + F D++L+A Y ++R FKYR F+ ++ + Sbjct: 71 DGFEFLAQFKDKILQALFISVFVTVVGTLTNVFITTTYAYAISRTTFKYRRFFTIFVLLS 130 Query: 128 TLFGGGLVPWYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKID 187 LF GLVP YIM+T+ L L D+ ALI P L++PF IILM++F + +PE + ESA+ID Sbjct: 131 MLFNAGLVPGYIMVTRVLQLGDTVWALIVPMLLSPFNIILMRSFFKKTIPEAILESARID 190 Query: 188 GAGDFKIYWRIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINS 247 GA + +I+++I L LS+PGIAT+ L AL +WNDWF++ L+I + Y LQ+ L + + Sbjct: 191 GASEARIFFQICLPLSLPGIATITLLTALGFWNDWFNALLYIKSDNLYPLQYLLMQIQQN 250 Query: 248 AAFIANMGAGTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVK 304 +IA G LG LP E+ +MAM ++ T PI LYPF QRYFVKGLTIG VK Sbjct: 251 MDYIAK-AVGLIGQLGVALPKETGRMAMVVVATLPIAILYPFFQRYFVKGLTIGGVK 306 >lin2116 [G] COG0395 ABC-type sugar transport system, permease component Length = 323 Score = 221 bits (563), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 107/274 (39%), Positives = 165/274 (60%), Gaps = 1/274 (0%) Query: 32 SLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEGYKTVFTFPDEVLRAYXXXXXXX 91 +L C+ PFL II S ++ S+ +G+ LIP ++S+E Y+ ++ ++L++Y Sbjct: 49 ALICIFPFLYIIVISFSSETSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYGITIVVT 108 Query: 92 XXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTLFGGGLVPWYIMMTKYLHLTDSY 151 Y ++R FKYR F+F +FT LF GG+VP YI+MT++LHL +S Sbjct: 109 VIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQFLHLRNSI 168 Query: 152 GALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGAGDFKIYWRIVLQLSMPGIATVG 211 A+I P M F I++M+ F ++PE + E+A+I+GAG+ +I+ ++V+ LS+PG+AT+ Sbjct: 169 WAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVPLSLPGLATIA 228 Query: 212 LFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAAFI-ANMGAGTGVSLGSDLPTES 270 LF L YWNDWF +SL+I++P+ LQ L + N+ F+ N +P + Sbjct: 229 LFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAYTAGAFKSIPQDG 288 Query: 271 TKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVK 304 KMAM +I T PI YPF Q+YF+ GLTIG VK Sbjct: 289 AKMAMVVISTLPIAITYPFFQKYFISGLTIGGVK 322 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 189 bits (481), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/289 (35%), Positives = 167/289 (57%), Gaps = 5/289 (1%) Query: 17 TRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEGYKTVFTF 76 RL L Y +++ +L C++PF+ +I+AS + ++ + LIP FSL+ Y+ +F+ Sbjct: 3 NRLFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFS- 61 Query: 77 PDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTLFGGGLVP 136 D + ++ Y L+R+D R F + FT LF GG++P Sbjct: 62 TDIIYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIP 121 Query: 137 WYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGAGDFKIYW 196 + ++ K L L DSY ALI P + F +I++KNF ++ +P L ESAKIDG D I++ Sbjct: 122 TF-LVVKSLGLLDSYWALILPTAINAFNLIILKNFFQN-IPSSLEESAKIDGCNDLGIFF 179 Query: 197 RIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAAFIANMGA 256 +IVL LS+P IAT+ LF A+ YWN + ++ L++ND K+ +Q L ++ ++ G Sbjct: 180 KIVLPLSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSS--GMQGD 237 Query: 257 GTGVSLGSDLPTESTKMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVKG 305 + + GS P ++ KMA+ ++ T P+L +YPFIQ++F KG +G+VKG Sbjct: 238 MSEMGSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 183 bits (464), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 6/290 (2%) Query: 17 TRLLQGLAYTVIILGSLACLVPFLLIISASLTANDSIIKDGYHLIPAQFSLEGYKTVFTF 76 +R+ Y + L S+ C +PF+ I++ S + + +++ + L P FSL+ Y+ +F+ Sbjct: 9 SRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFS- 67 Query: 77 PDEVLRAYXXXXXXXXXXXXXXXXXXXXAGYVLARKDFKYRNTFSFYIYFTTLFGGGLVP 136 D + R+ Y L+RKD R F + FT LF GG++P Sbjct: 68 TDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIP 127 Query: 137 WYIMMTKYLHLTDSYGALIFPGLMTPFLIILMKNFIRSAVPEELFESAKIDGAGDFKIYW 196 + ++ + L L D+Y ALI P + F +I++KNF ++ +PE L ESAKIDG D I++ Sbjct: 128 TF-LVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQN-IPESLEESAKIDGCNDVGIFF 185 Query: 197 RIVLQLSMPGIATVGLFLALAYWNDWFSSSLFINDPHKYQLQFHLYNVINSAAFIANMGA 256 RIV LSMP IAT+ LF A+ YWN + + L++ND + +Q L ++ ++ G Sbjct: 186 RIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSS--GMQGD 243 Query: 257 GTGVSLGSDLPTEST-KMAMAIIVTGPILFLYPFIQRYFVKGLTIGAVKG 305 T + G +P E T KMA+ ++ T P+L +YPFIQ++F KG +G+VKG Sbjct: 244 LTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.438 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,650,769 Number of extensions: 814780 Number of successful extensions: 2359 Number of sequences better than 1.0e-05: 136 Number of HSP's gapped: 2188 Number of HSP's successfully gapped: 136 Length of query: 305 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 199 Effective length of database: 26,153,027 Effective search space: 5204452373 Effective search space used: 5204452373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)