BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0016.p (532 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 129 9e-30 lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic... 120 6e-27 SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic ... 99 2e-20 SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic... 87 1e-16 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 60 8e-09 >BH0796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 500 Score = 129 bits (325), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 131/503 (26%), Positives = 217/503 (43%), Gaps = 62/503 (12%) Query: 41 EGGSNTAVKTEGNAAAAADTGIDTSKKVELQFYMLGDAPKDLPVIQDEINKMAQEELNAT 100 E G +A +TE T +D V L +YM+G DL ++ +E+N +E++NAT Sbjct: 37 ESGEQSANETEA-------TDLD---HVTLTWYMIGTPQPDLELVMEEVNAYTEEKINAT 86 Query: 101 VKFNYTSWTDWDQKYKLLLSSGQAIDLIFTADW-TQYQSYAKRGAFXXXXXXXXKAAPEL 159 V W ++D++ +++ +SG+A D+ FT+ W Y A+RGAF + E+ Sbjct: 87 VDLRMLDWGEYDERMQVITTSGEAYDIAFTSSWANNYALNARRGAFLELNDLLDEHGQEM 146 Query: 160 QKFVPESMWEDVKVDGKIYTVPATYKEYVTNGFV-YREDLRKKYNLPAPT--DLASYEAY 216 ++ + + E +VDGK+Y VP T KE + + +L +K+NL + LA E Sbjct: 147 KELIDPAFLEGAQVDGKLYAVP-TNKEVGQQAVLSFNNELVEKHNLDLSSVHSLADLEPL 205 Query: 217 MDGIAKNEPDLMPMSLNSDIGNNLHYIYTELNKMVG-ALPYGMGVKYESPTTVYSYWGSD 275 + I + E D+ P++ Y + ++ +P+ ++ + + Y D Sbjct: 206 LAVIKEEESDVTPIATFD--------AYLPFDSILQEEMPFAFRLEGNTNEVINKY-EED 256 Query: 276 EQKEELKTMKRWADKGFIPKNVLNIKDTMQDPITSGKAASMFGDNPTRYNDMKMKISTTH 335 E LKTM + KG+I + D+ P + ++ Sbjct: 257 ITMETLKTMHDYYKKGYIRPDAATSTDSW----------------PLETPNWFVRKELYQ 300 Query: 336 PDWELAYYPFGKTTGYATPVHPIHNGF-----------AIPKSSKNPERALAFYQKLVLD 384 P EL + +T GY P+H + AI +SKNPERA+ F L D Sbjct: 301 PYAELIW---TRTAGYEIATRPLHEPYIFNNSVTGSMQAISATSKNPERAMMFLNLLNSD 357 Query: 385 KRYNQLTQYGIEGKNY-TVEDGYYKLVGTSTSNGFTREGMNGWAWRNPEFM-LFDKGFDG 442 L GIEG +Y +EDG + R M +A N + L++ Sbjct: 358 PYLRNLLDKGIEGVHYEELEDGTINDLPARVE----RYNMPSFAIGNQLILKLYEDDPQD 413 Query: 443 VKAIFEELDKIQKPDLFLGFAEDYTSYQAEKAALEQVEKQYLFPLEAGLVADVDKGLETF 502 FE ++ P LGF D + E AA+ V ++ L G V D ++ L F Sbjct: 414 KWEAFEAFNESAIPSPALGFYFDSNPVRTEIAAISNVTSEFSPALLKGAV-DPEEYLPLF 472 Query: 503 MQKAKQAGLDKIQAEWTKQWNTY 525 K +AGL K+ E +Q++ + Sbjct: 473 NDKLNEAGLQKVIDEMQRQFDEW 495 >lin2115 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 485 Score = 120 bits (301), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 119/489 (24%), Positives = 216/489 (44%), Gaps = 40/489 (8%) Query: 54 AAAAADTGIDTSKKVELQFYMLGDAPKDLPVIQDEINKMAQEELNATVKFNYTSWTDWDQ 113 A +D D ++ L++YM+G KD + E+NK +E++ V+ W D+ + Sbjct: 19 GACGSDEKADANEVPTLKWYMIGTPQKDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGK 78 Query: 114 KYKLLLSSGQAIDLIFTADWTQYQSYAKRGAFXXXXXXXXKAAPELQKFVPESMWEDVKV 173 + + +++SG+ D+ ++A ++ SY+++GAF K +++ + E +WE + Sbjct: 79 RMQTVINSGENFDIAYSAA-GEFVSYSQKGAFLPLNKYLDKEGKKMKAELNEVLWEGATI 137 Query: 174 DGKIYTVPATYKEYVTNGFVYREDLRKKY--NLPAPTDLASYEAYMDGIAKNEPDLMPMS 231 DG IY VP+ + +V+ ++L KY ++ + + E + I +NEP + P+ Sbjct: 138 DGNIYGVPSNKEVGEQQVYVFNKNLVDKYKMDISKVKNFSDLEPMLKTIKENEPSITPIG 197 Query: 232 LNSDIGNNLHYIYTELNKMVGALPYGMGVKYESPTTVYSYWGSDEQKEELKTMKRWADKG 291 N D Y Y N + LP+ + +YE + +++ + E LK++ + KG Sbjct: 198 GNKDFKPAFSYDYLIDNAV--PLPFAVN-QYEDTGKIVNFYEQPDTLETLKSLHSFYQKG 254 Query: 292 FIPKNVLNIKDTMQDPITSGKAA--------SMFGDNPTRYNDMKMKISTTHPDWELAYY 343 ++ K++ T DP + K + +N N T P +A Sbjct: 255 YVTKDIA----TSTDPWSYDKENWFVRIEKYQPYAENIWDKNTGGKYKVVTQP---IAET 307 Query: 344 PFGKTTGYATPVHPIHNGFAIPKSSKNPERALAFYQKLVLDKRYNQLTQYGIEGKNYT-V 402 P K + A+ +S++PE A+ F L D+ L GIEG +Y + Sbjct: 308 PIIKNNSVTGAIQ------AVSVTSQHPEEAVKFLDLLNTDEYLRNLVDKGIEGTHYKEL 361 Query: 403 EDGYYKLVGTSTSNGFTREGMNGWAWRNPEFMLFDKGFDGVKA----IFEELDKIQKPDL 458 +DG + + R M +A N F+L K ++ A F+ +K Sbjct: 362 DDGKIQDLPARVE----RYSMPTYALGN-HFIL--KLYEDEPADKWDQFKTFNKKSVASP 414 Query: 459 FLGFAEDYTSYQAEKAALEQVEKQYLFPLEAGLVADVDKGLETFMQKAKQAGLDKIQAEW 518 LGF D + + E A++ V ++ L G V V+ E F K AG+ K+ E Sbjct: 415 GLGFYFDSSKVRTEIASITNVCNEFAPALLTGTVDPVEY-TEKFKAKLNDAGMKKVMKEM 473 Query: 519 TKQWNTYTA 527 KQ++ Y A Sbjct: 474 QKQYDEYRA 482 >SP0092 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 491 Score = 99.0 bits (245), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 118/491 (24%), Positives = 209/491 (42%), Gaps = 42/491 (8%) Query: 52 GNAAAAADTGIDTSKKVELQFYMLGDAPKDLPVIQDEINKMAQEELNATVKFNYTSWTDW 111 GN+ AAD+G K ++ Y +GD P +L + NK+ +E++ A + Y W D+ Sbjct: 29 GNSKKAADSG----DKPVIKMYQIGDKPDNLDELLANANKIIEEKVGAKLDIQYLGWGDY 84 Query: 112 DQKYKLLLSSGQAIDLIFTADWTQYQSYAKRGAFXXXXXXXXKAAPELQKFVPESMWEDV 171 +K ++ SSG+ D+ F + Y A++GA+ K +L K + + + Sbjct: 85 GKKMSVITSSGENYDIAFADN---YIVNAQKGAYADLTELYKKEGKDLYKALDPAYIKGN 141 Query: 172 KVDGKIYTVPATYKEYVTNGFVYREDLRKKY--NLPAPTDLASYEAYMDGIAKNEPDLMP 229 V+GKIY VP + F + L KY ++ T + E + I + PD++P Sbjct: 142 TVNGKIYAVPVAANVASSQNFAFNGTLLAKYGIDISGVTSYETLEPVLKQIKEKAPDVVP 201 Query: 230 MSLNSDIGNNLHYIYTELNKMVGALPYGMGVKYESPTTVYSYWGSDEQKEELKTMKRWAD 289 ++ + ++ Y N LP+ + ++ ++ T V + + KE LKT+ ++ + Sbjct: 202 FAIGKVFIPSDNFDYPVAN----GLPFVIDLEGDT-TKVVNRYEVPRFKEHLKTLHKFYE 256 Query: 290 KGFIPKNVLNIKDTMQDPITSGKAASMFGDNPTRYNDMKMKISTTHPDWELA----YYPF 345 G+IPK+V DT D P Y + + + D ++ + Sbjct: 257 AGYIPKDVA-TSDTSFDLQQDTWFVREETVGPADYGNSLLS-RVANKDIQIKPITNFIKK 314 Query: 346 GKTTGYATPVHPIHNGFAIPKSSKNPERALAFYQKLVLDKRYNQLTQYGIEGKNYTVEDG 405 +TT A F I +SKN E+++ L + YG EGKN+ +G Sbjct: 315 NQTTQVAN--------FVISNNSKNKEKSMEILNLLNTNPELLNGLVYGPEGKNWEKIEG 366 Query: 406 YYKLVGTSTSNGFT-REGMNGWAWRNPEFM-----LFDKGFDGVKAIFEELDKIQKPDLF 459 V +G+ M GW N + + D+ + K E K Sbjct: 367 KENRV--RVLDGYKGNTHMGGWNTGNNWILYINENVTDQQIENSKKELAE----AKESPA 420 Query: 460 LGFAEDYTSYQAEKAALEQVEKQYLFPLEAGLVADVDKGLETFMQKAKQAGL-DKIQAEW 518 LGF + + ++E +A+ +Q+ + G V D DK + M+K K G +K+ E Sbjct: 421 LGFIFNTDNVKSEISAIANTMQQFDTAINTGTV-DPDKAIPELMEKLKSEGAYEKVLNEM 479 Query: 519 TKQWNTYTAEK 529 KQ++ + K Sbjct: 480 QKQYDEFLKNK 490 >SPy1592 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 380 Score = 86.7 bits (213), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 88/367 (23%), Positives = 138/367 (37%), Gaps = 44/367 (11%) Query: 48 VKTEGNAAAAADTGIDTSKKVELQFYMLGDAPKDLPVIQDEINKMAQEELNATVKFNYTS 107 V N AA V+L Y +GD P + + NK +E+ ATV Y Sbjct: 14 VLATSNLAACESKSASKDSDVKLLMYQVGDKPDNFDELMTIANKRIKEKTGATVDLQYIG 73 Query: 108 WTDWDQKYKLLLSSGQAIDLIFTADWTQYQSYAKRGAFXXXXXXXXKAAPELQKFVPESM 167 W DWD K +++SG+ D+ F Y A++GAF K A + K + + Sbjct: 74 WGDWDDKMSTIIASGENYDIAFA---NNYVVNAQKGAFADLTTLMPKYAKKTYKNLDPAY 130 Query: 168 WEDVKVDGKIYTVPATYKEYVTNGFVYREDLRKKYNLPAPTDLASYEAYMDG------IA 221 + +DGK+Y P Y + ++L KY L D+++ ++Y D Sbjct: 131 IKGNTIDGKLYAFPVDANVYAQQMLSFNKELVDKYGL----DISNIKSYADAENVLKQFH 186 Query: 222 KNEPDLMPMSLNSDIGNNLHYIYTELNKMVGALPYGMGVKYESPTTVYSYWGSDEQ-KEE 280 + EP+ ++ + Y Y + P+ + + PT + Y DE K Sbjct: 187 EKEPNTAAFAIGQVFSMSGDYDYP----LTKTQPFAVKIDEGKPTIINQY--EDESFKNN 240 Query: 281 LKTMKRWADKGFIPKNVLNIKDTMQDPITSGKAASMFGDN---------PTRYNDMKMKI 331 L+ M +W +G IP D T+ + + G+ P Y D I Sbjct: 241 LRLMHKWYKEGLIP----------TDAATNTEGYPLEGNTWFMREETQGPMDYGDT---I 287 Query: 332 STTHPDWELAYYPFGKTTGYATPVHPIHNGFAIPKSSKNPERALAFYQKLVLDKRYNQLT 391 T ++ P T T F + SKN E+A+ L D Sbjct: 288 LTNAAGKDIVSRPL--TKPLKTTSQAQMANFVVSSVSKNKEKAVEVLSLLNSDPELLNGL 345 Query: 392 QYGIEGK 398 YG+EGK Sbjct: 346 VYGVEGK 352 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 73/268 (27%), Positives = 114/268 (42%), Gaps = 45/268 (16%) Query: 165 ESMWEDVKVDGKIYTVPATYKE--YVTNGFVYREDLRKKYNLPAPTDLASYEAYMDGIAK 222 E++ E+V VDGKIY + Y+E G V R+D + L PT+L Sbjct: 146 ETILENVSVDGKIYGI---YRERPLSRQGVVIRQDWLENLGLEMPTNLEELYEVARAFTY 202 Query: 223 NEPDLMPMSLNSDIGNNLHYIYTELNKMVGALPYGMGVKYESPTTVYSYWG--------- 273 ++P+ + +G +T+ N ++ + + +P WG Sbjct: 203 DDPN--GSGADDTVG------FTDRNDLIFGAFKTLASYHGTPNE----WGFDDEGKLMP 250 Query: 274 ---SDEQKEELKTMKRWADKGFIPKNV-LNIKDTMQDPITSGKAASMFGDNPTRYNDMKM 329 +DE E + MK D+G I + K+ Q+ +G+A G N +++ Sbjct: 251 EFMTDEYVETMNYMKSLYDEGLINTEFPVTSKEQQQELFMTGRAGIYVG-NMVDARNLRD 309 Query: 330 KISTTHPDWELAYY-----PFGKTTGYATPVHPIHNG-FAIPKSSKNPE----RALAFYQ 379 K +P+ E+A P G+ +A HNG FAIPKSS E R LAF+ Sbjct: 310 KAKDINPEMEVAITNRIAGPDGEDRVWA---QGGHNGIFAIPKSSVETEAELKRILAFFD 366 Query: 380 KLVLDKRYNQLTQYGIEGKNYTVEDGYY 407 ++ + YN L YGIE +Y DG Y Sbjct: 367 RIAEEDVYN-LMAYGIEDVHYETIDGEY 393 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.314 0.132 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 39,215,635 Number of extensions: 1790877 Number of successful extensions: 2186 Number of sequences better than 1.0e-05: 5 Number of HSP's gapped: 2178 Number of HSP's successfully gapped: 5 Length of query: 532 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 421 Effective length of database: 25,576,357 Effective search space: 10767646297 Effective search space used: 10767646297 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)