BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0013.p (743 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins 114 5e-25 BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing prot... 83 2e-15 CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing prot... 74 9e-13 lin1152 [K] COG2207 AraC-type DNA-binding domain-containing prot... 74 1e-12 BH3679 [T] COG4753 Response regulator containing CheY-like recei... 70 1e-11 >BH0483 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 769 Score = 114 bits (286), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 134/586 (22%), Positives = 255/586 (43%), Gaps = 57/586 (9%) Query: 200 IVNISAPWINKEITSPVDSKSDTFILADQG---------KLLSVDSLEPHGLSPLEAAWV 250 I +I A +NK ++ +S+++ F L D+ +L D L L +EA Sbjct: 195 IASIPACSVNKILSE--NSQNEAFFLLDEQYRPVGYHNLSILEDDLLSDGTL--IEALAT 250 Query: 251 QQRIQGREAGYFIGEFGGVNSLISYTAPDDLSWQYVRITPYDIITRQTNSIRNATLLIAA 310 QQ G G F +++ D W YV + + +Q+N+I T+ I+A Sbjct: 251 QQTANGN--GQFSLPLSHSTYTVTFRTSDYNQWTYVSVISSRELAKQSNAIGAFTMYISA 308 Query: 311 LIFVGGLAFSWLMSRRVYLPISRIVREMNIL------EGEKRDSMFTIRQNTLRDLILGL 364 + + L +SW+ SRR+Y P+ + + + + +D I + L L Sbjct: 309 GVLLLSLLYSWVGSRRIYRPVQELYQMITATFSAGSAKKPPKDEFELIHAHIHNVLDLNN 368 Query: 365 KPLQSIQ-QVEKLRQLGIHFTFXXXXXXXXXXXXNYQEF---RESRSSYLLAYK------ 414 + + +Q Q+++L+Q + Y+ F ++ R ++L + Sbjct: 369 ELEEKLQGQIKQLKQFFV-LNLIKGHMSPSEIETKYETFQYPKDWRQLHVLTLQIDSLEG 427 Query: 415 ------------FAIMNIASEICGQTYRVETVDMNDDGILVLLNIVDAKEYTDT---ELI 459 F+I N+ + + R+ +N+ +L+LL VD ++ D E Sbjct: 428 TKYAKEEKDVLLFSINNLVETLIPEVERLTPALLNNTVVLILLTNVDQEQKRDGFVREKA 487 Query: 460 ETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLHQLYKQVREASNHRLFFGHGCIISAQY 519 E ++ +++Q + + ++L Y I + + Y + EA +R+ G +I Sbjct: 488 EAIMNEVRQQLDISVSIGVSLPYDDI----TKTQEAYDEGIEALKYRIKLGCQSVIFFSN 543 Query: 520 ICALQANIYHYPTEKEKKLTDALMSGKIDEAREQFSSIIRET--ADYPFPSVQLAVSRLS 577 + + +YP ++E +L DAL G ++ ++I D Q+++ RL Sbjct: 544 LAHTHSFHTYYPKQQENELFDALKLGDKSNVKDHLDALIDGIFQKDLHPSQYQISLLRLL 603 Query: 578 VTIKEILINIQKRNRLHNDGTAELPALDSVETVDALEQAFFA-LFSEMHEQLAEKKNSKQ 636 ++L + + D L S++T+D ++Q FF L + +AE+ +S+ Sbjct: 604 NNTIQLLQTLGIDSVDVYDKKTLFDQLFSLQTIDEVKQWFFTKLIAPSVHTVAERMDSQY 663 Query: 637 HDLVRQINQKI-NEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIVDVILEVRMRE 695 + QI I NE ME L+L IA+ L+ +P Y+S +++++T S + + R+ Sbjct: 664 RTISDQIIHIIQNEFDME--LTLESIAERLHYNPNYLSSIFRKETNISFSEYLSSYRLAM 721 Query: 696 VCSLLENTGLPVTTIAERCGFTSSSYLHRMFKRSFGTTPTDYRRSR 741 L T +P+ IAER + +S R FK+ G TP YR+S+ Sbjct: 722 AKKWLLETSMPIREIAERLCYGNSQNFIRSFKKKEGMTPGKYRQSK 767 >BS_yesS [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 761 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 148/655 (22%), Positives = 262/655 (40%), Gaps = 100/655 (15%) Query: 162 TPIPRVYS---NGAAENGQVRAY-TFLCYD-AIGWDRAINSAVIVNISAPWINKE---IT 213 +P P V S + E +R Y + L D +I W R+ N A+++ + K I Sbjct: 130 SPRPLVLSPEYSALTEQEALRKYRSLLASDHSIYWKRSGNQAMLIQLIPGAAEKPFGAIM 189 Query: 214 SPVDSKSDTFILAD-----QGKLLSVDS----LEPHGLSPLEAAWVQQ-RIQGREAGYFI 263 VD K IL G L +D L G E + + + Q E G+F Sbjct: 190 LAVDPKEMESILQSLSPYPDGSALLLDQNREVLFHEGEKDFEKTLLHEIKKQPAENGHFQ 249 Query: 264 GEFGGVNSLISYTAPDDL--SWQYVRITPYDIITRQTNSIRNATLLIAALIFVGGLA--F 319 E+ G +S+ + + W +V P IT + + ++I L+ GLA Sbjct: 250 MEWKGKVYSVSFGEMNRMHQQWTFVSAAPLSAIT--APMVFLSKVIIVMLVICIGLAVCM 307 Query: 320 SWLMSRRVYLPISRIVREMNILEG-----------------EKRDSMFTIRQNTLRDLIL 362 +W S+++Y PI + + + G EKR ++ L+ +L Sbjct: 308 TWYASKKIYRPIQHL---LGLFTGGEKKTWQASGQDEFKWIEKRWQDLSLESRKLQQQLL 364 Query: 363 GLKP------LQSIQQVE-----------KLRQLGIHF---TFXXXXXXXXXXXXNYQEF 402 P LQ + Q + ++ + G + F F Sbjct: 365 RQTPHMKKSFLQHLLQSDFYYDNEESLRFRMEEAGWNIGGNVFHVLDLQVTGLRCEKSIF 424 Query: 403 RESRSSYLLAYKFAIMNIASEICGQ-TYRVETVDMNDDGILVLL---NIVDAKEYTDTEL 458 RE + F + NIA E+ + +++ +D+ + VL+ N D K Y Sbjct: 425 REGDEQLAV---FTLTNIAEELAAKRVFQLSILDIGRLSVTVLVMKTNSSDLKAY----- 476 Query: 459 IETLLRQIQQACSDYLKVSLTLAYSHIDHNPVQLHQLYKQVREASNHRLFFGHGCIISAQ 518 I L RQ D + LT S ++ L++ V+ + R F +I Q Sbjct: 477 ITELARQF----GDVTGLCLTSTLSSKTERVTEIPSLFQDVKCGKSRRKFANRDQVIDLQ 532 Query: 519 YICALQANIY-HYPTEKEKKLTDALMSGKIDEAREQFSSIIRETADYPFPSVQLAVSR-L 576 +YP E EK++ + + EA+E ++E ++ + A+ R + Sbjct: 533 ADFPRDEQFAPYYPFELEKQIVQTIRLERKQEAKELIDGCMKELSE------KAAIDRHV 586 Query: 577 SVTIKEILINIQKRNRLHND-GTAEL-----PALDSVETVDALEQAFF---ALFSEMHEQ 627 + ++ IQ+ + LH+ +EL P LD E + E A + + + + Sbjct: 587 HSALIQLFSRIQE-DILHSGLNPSELFQHRNPFLDISELREPNEAAAWLMDVVVTPYLSK 645 Query: 628 LAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIVDV 687 L +KN +Q L ++ I+E YM +SL AD L M+ +S+ +KQ T + +D Sbjct: 646 LEGRKNRQQKQLAERVIAMIHEQYM-ADISLESCADALGMNSYTLSKAFKQVTGINFIDY 704 Query: 688 ILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYLHRMFKRSFGTTPTDYRRSRQ 742 + ++R+ + LL NT + ++E G+ +Y +R+FK+ G P +R+ Q Sbjct: 705 VTQIRIEKAKELLVNTNKKIHDVSEEVGY-RHNYFNRIFKKQVGMPPGVFRQMYQ 758 >CAC1451 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 295 Score = 73.9 bits (180), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 36/93 (38%), Positives = 57/93 (61%), Gaps = 1/93 (1%) Query: 647 INEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIVDVILEVRMREVCSLLENTGLP 706 I E Y E L+LN++AD +N S + R +KQ T + D I +R+ + + L+ T L Sbjct: 194 IEEKYTEK-LTLNELADCVNFSTHHFCRTFKQMTGKTTTDYINGIRLYKSTNYLKQTDLN 252 Query: 707 VTTIAERCGFTSSSYLHRMFKRSFGTTPTDYRR 739 +T IA +CGF +++Y R+FK+ + TPT YR+ Sbjct: 253 ITEIAIKCGFDNNNYFSRLFKKHYDMTPTKYRK 285 >lin1152 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 183 Score = 73.9 bits (180), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/153 (29%), Positives = 84/153 (54%), Gaps = 4/153 (2%) Query: 591 NRLHNDGTAELPALDSVETVDALEQAFFALFSEMH---EQLAEKKNSKQHDLVRQINQKI 647 N+ + D +A L +L++VE +D L + A + E K S +H ++Q + I Sbjct: 30 NKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPKKEAATSSKTSGEHKEIKQAIRYI 89 Query: 648 NEAYMEPSLSLNQIADELNMSPIYISRLYKQQTLTSIVDVILEVRMREVCSLLENTGLPV 707 + + S++L ++A+ + +SP Y+S+L+K + + ++ + E +M LE + V Sbjct: 90 KKN-IHRSITLEEVANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAV 148 Query: 708 TTIAERCGFTSSSYLHRMFKRSFGTTPTDYRRS 740 TIA+ GF+ +SY ++FK+ F TP +YR S Sbjct: 149 HTIAKNLGFSRASYFCKVFKKEFDMTPKEYRDS 181 >BH3679 [T] COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain Length = 257 Score = 70.1 bits (170), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/132 (28%), Positives = 70/132 (53%), Gaps = 17/132 (12%) Query: 608 ETVDALEQAFFALFSEMHEQLAEKKNSKQHDLVRQINQKINEAYMEPSLSLNQIADELNM 667 E +DA+E+ + +HE L H + ++QKI L +A +++ Sbjct: 140 EKIDAIEKERLSSSDSIHEAL--------HYIDAHLDQKIG---------LKDVAKSVHL 182 Query: 668 SPIYISRLYKQQTLTSIVDVILEVRMREVCSLLENTGLPVTTIAERCGFTSSSYLHRMFK 727 +P Y+S L+K++T + + + R++ LL +T P++ IAE+CG+ ++ Y ++FK Sbjct: 183 NPSYLSALFKEKTNMTFSEYLTRKRLQHAKHLLVSTDRPISDIAEKCGYQTAKYFIKIFK 242 Query: 728 RSFGTTPTDYRR 739 G TPT YR+ Sbjct: 243 EHEGMTPTQYRK 254 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.134 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 49,858,338 Number of extensions: 2034189 Number of successful extensions: 11484 Number of sequences better than 1.0e-05: 60 Number of HSP's gapped: 11503 Number of HSP's successfully gapped: 60 Length of query: 743 Length of database: 38,378,431 Length adjustment: 114 Effective length of query: 629 Effective length of database: 25,230,355 Effective search space: 15869893295 Effective search space used: 15869893295 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 120 (50.8 bits)