BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0012.p (251 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins 72 6e-13 araC [K] COG2207 AraC-type DNA-binding domain-containing proteins 64 2e-10 ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing prot... 64 2e-10 BMEII0648 [K] COG2207 AraC-type DNA-binding domain-containing pr... 64 3e-10 slr1213_2 [K] COG2207 AraC-type DNA-binding domain-containing pr... 62 6e-10 >BH0989 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 278 Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 35/100 (35%), Positives = 59/100 (59%) Query: 148 MQYVLNYMNEHYRHKLSITSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLL 207 ++ V+ Y++ HY +++ LA+MSG F +LFK+ G P YL+ RL AK+LL Sbjct: 170 IEQVVEYIHHHYMEPMTVKKLADMSGMGVKPFSYLFKKYIGMFPIDYLIQYRLKRAKNLL 229 Query: 208 LHTQMHISGVSAAAGFVNDAQFCNMFKREIGLSPRTFRLQ 247 + + I+ ++ + G+++ F +FK+ IG SP FR Q Sbjct: 230 VSSNSSIADIAESIGYLDALYFSRLFKKHIGCSPTAFRAQ 269 >araC [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 20/258 (7%) Query: 13 EANTYIP-----PHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHDENHQP 67 EAN Y+ P + + L I G G R F RP L PP H P Sbjct: 27 EANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHP 86 Query: 68 SPEVLFVGF-----------HCGNPIINTLSGVYDDDKEHTV-LQTLLRMNEEFKRKRDG 115 + + P I +G + D+ H L + Sbjct: 87 EAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGR 146 Query: 116 FAELLNLQMSEVTVYLQRLLAASD-FHSPAEDQMQYVLNYMNEHYRHK-LSITSLAEMSG 173 ++ELL + + E + L+R+ A ++ H P +++++ Y+++H I S+A+ Sbjct: 147 YSELLAINLLE-QLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVC 205 Query: 174 YSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSAAAGFVNDAQFCNMF 233 S R HLF+++ G S + +R+ AK LL T+M I+ V GF + F +F Sbjct: 206 LSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVF 265 Query: 234 KREIGLSPRTFRLQSKVK 251 K+ G SP FR + K Sbjct: 266 KKCTGASPSEFRAGCEEK 283 >ECs0068 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 292 Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 65/258 (25%), Positives = 105/258 (40%), Gaps = 20/258 (7%) Query: 13 EANTYIP-----PHQHECFELVYYIHGHGTTSIGPRSFHFRPFTFALIPPNFKHDENHQP 67 EAN Y+ P + + L I G G R F RP L PP H P Sbjct: 27 EANGYLDFFIDRPLGMKGYILNLTIRGQGVVKNQGREFVCRPGDILLFPPGEIHHYGRHP 86 Query: 68 SPEVLFVGF-----------HCGNPIINTLSGVYDDDKEHTV-LQTLLRMNEEFKRKRDG 115 + + P I +G + D+ H L + Sbjct: 87 EAREWYHQWVYFRPRAYWHEWLNWPSIFANTGFFRPDEAHQPHFSDLFGQIINAGQGEGR 146 Query: 116 FAELLNLQMSEVTVYLQRLLAASD-FHSPAEDQMQYVLNYMNEHYRHK-LSITSLAEMSG 173 ++ELL + + E + L+R+ A ++ H P +++++ Y+++H I S+A+ Sbjct: 147 YSELLAINLLE-QLLLRRMEAINESLHPPMDNRVREACQYISDHLADSNFDIASVAQHVC 205 Query: 174 YSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMHISGVSAAAGFVNDAQFCNMF 233 S R HLF+++ G S + +R+ AK LL T+M I+ V GF + F +F Sbjct: 206 LSPSRLSHLFRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVF 265 Query: 234 KREIGLSPRTFRLQSKVK 251 K+ G SP FR + K Sbjct: 266 KKCTGASPSEFRAGCEEK 283 >BMEII0648 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 135 Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 34/98 (34%), Positives = 50/98 (51%) Query: 154 YMNEHYRHKLSITSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSLLLHTQMH 213 Y+ E++R +S+ +A M G S F F+E FG +PHRYLL RLD A+ L T M Sbjct: 35 YLQENFRGPVSVPDMAAMLGISAGHFATCFRESFGQTPHRYLLKLRLDEAERCLRETDMP 94 Query: 214 ISGVSAAAGFVNDAQFCNMFKREIGLSPRTFRLQSKVK 251 IS ++A F + + ++ L+P R K Sbjct: 95 ISEIAARLNFSSQSHLTTALRKYRRLTPGKIRQAGASK 132 >slr1213_2 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 116 Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 29/99 (29%), Positives = 60/99 (60%) Query: 147 QMQYVLNYMNEHYRHKLSITSLAEMSGYSYDRFRHLFKERFGHSPHRYLLLKRLDYAKSL 206 ++Q L+Y+ EH +++ LA G S F F++ G SP+++++ +R++ AK++ Sbjct: 16 RLQPTLDYIEEHLDQGITVEFLAGAIGMSTAYFCRFFQKEMGCSPYQFIIQQRVERAKAI 75 Query: 207 LLHTQMHISGVSAAAGFVNDAQFCNMFKREIGLSPRTFR 245 LL ++ IS V+ GF + +Q + F+ +G++P+ +R Sbjct: 76 LLERELSISEVALRCGFSSHSQLNHHFRNLLGITPKEYR 114 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.138 0.422 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,278,339 Number of extensions: 738367 Number of successful extensions: 2509 Number of sequences better than 1.0e-05: 69 Number of HSP's gapped: 2508 Number of HSP's successfully gapped: 69 Length of query: 251 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 147 Effective length of database: 26,383,695 Effective search space: 3878403165 Effective search space used: 3878403165 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 114 (48.5 bits)