BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0011.p (378 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SMc02884 [R] COG1744 Uncharacterized ABC-type transport system, ... 146 6e-35 AGc200 [R] COG1744 Uncharacterized ABC-type transport system, pe... 137 2e-32 AGc2001 [E] COG1296 Predicted branched-chain amino acid permease... 137 2e-32 AGc2002 [S] COG4541 Predicted membrane protein 137 2e-32 AGc2006 [L] COG0305 Replicative DNA helicase 137 2e-32 >SMc02884 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 330 Score = 146 bits (368), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 103/312 (33%), Positives = 163/312 (52%), Gaps = 23/312 (7%) Query: 60 DKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAEDWDVVISGGSEITEM 119 DKSF +AA +G +K K E G E + E+ D + E A++ ++ G Sbjct: 36 DKSFNEAAFNGAEKFKTETGIEYREFEIANDAQR-EQALRRFASDGNSPIVMAGFNWAAS 94 Query: 120 FNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAALATQSDMPNANKEN 179 A PD KF D +E+ N+ ++ + E S+L G +A LA+ K Sbjct: 95 LEKLAGEYPDTKFAIIDMVVEKP--NVKSIVFKEQEGSYLVGVLAGLAS--------KTK 144 Query: 180 VIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGD----FVNPAKGKELSLIQYN 235 + FVGGMDIP I+ F GY+ GA+ DVKV +Y G + +P KG E++ Q + Sbjct: 145 TVSFVGGMDIPLIHKFACGYVGGAKSTGADVKVLEAYTGTTPDAWNDPVKGGEIAKSQID 204 Query: 236 SGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANLIVTSAIKKIDM 295 G DV+++ AGGTG+G+ AA + K IGVDS+Q ML + ++TS +K++D+ Sbjct: 205 QGSDVVYHAAGGTGVGVLQAAADAGKLGIGVDSNQNML-------QPGKVLTSMLKRVDV 257 Query: 296 AILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKVEEVKQKLINKE 355 A+ + +D E G + LG EDGVG A ++ + + +++ VE+VK +I+ + Sbjct: 258 AVYDSFMAAKDDKFEFGISN-LGLKEDGVGYALDEHNQVLITPEMKEAVEKVKADIISGK 316 Query: 356 ITVDNAMGMETS 367 + V + M ET Sbjct: 317 VQVHDYMTDETC 328 >AGc200 [R] COG1744 Uncharacterized ABC-type transport system, periplasmic component/surface lipoprotein Length = 218 Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 25/316 (7%) Query: 53 LIPGTLG--DKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAEDWDVVI 110 + S A + E+ + A +V+ Sbjct: 34 QMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALE-LARAKALAVSALHPEALVL 92 Query: 111 SGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAALATQS 170 + + + + S + + + Sbjct: 93 GCDQTMALGTRVYHKPKNMAEAATHLL-SLSGK-VHRLNSAAVLVHNGKVVWQTVSSA-- 148 Query: 171 DMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGD----FVNPAKG 226 + V + + + + + F Sbjct: 149 ------ELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLP 202 Query: 227 KELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANLIV 286 Sbjct: 203 ------- 255 Query: 287 TSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKVEE 346 Sbjct: 256 - 314 Query: 347 VKQKLINKEITVDNAM 362 Sbjct: 315 330 >AGc2001 [E] COG1296 Predicted branched-chain amino acid permease (azaleucine resistance) Length = 218 Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 25/316 (7%) Query: 53 LIPGTLG--DKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAEDWDVVI 110 + S A + E+ + A +V+ Sbjct: 34 QMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALE-LARAKALAVSALHPEALVL 92 Query: 111 SGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAALATQS 170 + + + + S + + + Sbjct: 93 GCDQTMALGTRVYHKPKNMAEAATHLL-SLSGK-VHRLNSAAVLVHNGKVVWQTVSSA-- 148 Query: 171 DMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGD----FVNPAKG 226 + V + + + + + F Sbjct: 149 ------ELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLP 202 Query: 227 KELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANLIV 286 Sbjct: 203 ------- 255 Query: 287 TSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKVEE 346 Sbjct: 256 - 314 Query: 347 VKQKLINKEITVDNAM 362 Sbjct: 315 330 >AGc2002 [S] COG4541 Predicted membrane protein Length = 218 Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 25/316 (7%) Query: 53 LIPGTLG--DKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAEDWDVVI 110 + S A + E+ + A +V+ Sbjct: 34 QMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALE-LARAKALAVSALHPEALVL 92 Query: 111 SGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAALATQS 170 + + + + S + + + Sbjct: 93 GCDQTMALGTRVYHKPKNMAEAATHLL-SLSGK-VHRLNSAAVLVHNGKVVWQTVSSA-- 148 Query: 171 DMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGD----FVNPAKG 226 + V + + + + + F Sbjct: 149 ------ELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLP 202 Query: 227 KELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANLIV 286 Sbjct: 203 ------- 255 Query: 287 TSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKVEE 346 Sbjct: 256 - 314 Query: 347 VKQKLINKEITVDNAM 362 Sbjct: 315 330 >AGc2006 [L] COG0305 Replicative DNA helicase Length = 218 Score = 137 bits (346), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 0/316 (0%), Positives = 0/316 (0%), Gaps = 25/316 (7%) Query: 53 LIPGTLG--DKSFFDAANSGLQKVKDELGAETKVVEMGADKTKWEPTFNDIAAEDWDVVI 110 + S A + E+ + A +V+ Sbjct: 34 QMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALE-LARAKALAVSALHPEALVL 92 Query: 111 SGGSEITEMFNATAEANPDKKFINYDTDIEEAPKNMYNMSYSTNEVSFLAGAVAALATQS 170 + + + + S + + + Sbjct: 93 GCDQTMALGTRVYHKPKNMAEAATHLL-SLSGK-VHRLNSAAVLVHNGKVVWQTVSSA-- 148 Query: 171 DMPNANKENVIGFVGGMDIPGINAFLVGYIQGAQYVDPDVKVAVSYAGD----FVNPAKG 226 + V + + + + + F Sbjct: 149 ------ELAVRTLSAEFVSRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLP 202 Query: 227 KELSLIQYNSGVDVIFNVAGGTGLGIFDAAKEKTKYAIGVDSDQAMLLKDTDSEKANLIV 286 Sbjct: 203 ------- 255 Query: 287 TSAIKKIDMAILGAVKKLQDGTLEMGKRDVLGFVEDGVGIAENDIYKNVFPADLQAKVEE 346 Sbjct: 256 - 314 Query: 347 VKQKLINKEITVDNAM 362 Sbjct: 315 330 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.312 0.131 0.362 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 24,901,238 Number of extensions: 1029191 Number of successful extensions: 2406 Number of sequences better than 1.0e-05: 36 Number of HSP's gapped: 2358 Number of HSP's successfully gapped: 36 Length of query: 378 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 270 Effective length of database: 25,922,359 Effective search space: 6999036930 Effective search space used: 6999036930 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 117 (49.7 bits)