BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0009.p (348 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0086 [R] COG4603 ABC-type uncharacterized transport system,... 220 3e-57 SMb20126 [R] COG4603 ABC-type uncharacterized transport system, ... 143 4e-34 mll4175 [R] COG4603 ABC-type uncharacterized transport system, p... 135 9e-32 SMa2367 [R] COG4603 ABC-type uncharacterized transport system, p... 125 1e-28 STM0104 [K] COG2207 AraC-type DNA-binding domain-containing prot... 115 8e-26 >BMEII0086 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 359 Score = 220 bits (560), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 108/285 (37%), Positives = 174/285 (61%) Query: 31 SDQPVKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSG 90 D P + F L P + H+GNV+E A P+M TGLA+++LFR+ +FNLGAE F+ Sbjct: 33 QDNPAAILKTFFLGPFGSIRHMGNVVEAATPIMLTGLAITILFRSGLFNLGAESGFFLGA 92 Query: 91 VVASVLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFG 150 + A A+ L W VAI G++ G+ IP L+ ++ A+E+VTSL+ N Sbjct: 93 LGAVAGAVLLPSLGWFSLPVAILCGAVAGSFACTIPAALRLRFGASEMVTSLVLNYAFLF 152 Query: 151 VGLYLLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTK 210 +GL++LNY +RD A +S + A+L ++ GTR+++G ++LY T+ Sbjct: 153 LGLFVLNYVIRDPNAGGMMSLRIPADAKLDRLLAGTRLNSGSIIAVLACIAGGIWLYWTR 212 Query: 211 WGYELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGY 270 G +R+ G++ FA + G+ +I+ ++ G +AGM G++EVLG+++RF W LPGY Sbjct: 213 SGLNIRIAGSSPGFANHLGLPLKGIIMRAQIVGGLVAGMAGALEVLGLHARFAWLDLPGY 272 Query: 271 GLDGALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEM 315 G G +VA+LA+ NP +I SALFL ++++G DL+AR ++P+E+ Sbjct: 273 GWTGLVVAILARENPFLLIPSALFLGFVQVGGDLLARNMNIPTEV 317 >SMb20126 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 365 Score = 143 bits (360), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 92/278 (33%), Positives = 155/278 (55%), Gaps = 1/278 (0%) Query: 37 TIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSGVVASVL 96 I + +L I ++ A PL+ G+ + + FR +++N+GAEG FY + A+ Sbjct: 59 VIDVMVLGVFQDTRSIAEILLKATPLILIGVGLCVAFRCSIWNIGAEGQFYAGAIAATAA 118 Query: 97 AIHLS-LGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFGVGLYL 155 + L +W++ + + AG++ GA +AI G+LK + A+E+VT++M N I + YL Sbjct: 119 GVSFDGLTAWIYVPLVMIAGALAGAAWAAIAGLLKVYFRASEIVTTIMLNYIAIIMTSYL 178 Query: 156 LNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTKWGYEL 215 + LRDA A S + + A + +I P TR+H G ++FL+R+ GY L Sbjct: 179 VTGPLRDAAAAYPQSARLVQEAWMPRILPPTRLHIGILVALALAVVMYIFLFRSTRGYAL 238 Query: 216 RMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGYGLDGA 275 R+ G + + ARY+G+ + I+L ++G +AG+ G+ E+ G+ R + PGYG +G Sbjct: 239 RVVGISPDAARYAGISVPRNIMLSICLSGSMAGLAGAFEIAGVTRRLFQSISPGYGFEGI 298 Query: 276 LVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPS 313 VA+LA NNP+ + S L A +R G++LM + VP Sbjct: 299 AVALLANNNPIGAVFSGLLFAILRSGSELMQITAQVPQ 336 >mll4175 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 351 Score = 135 bits (340), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 90/279 (32%), Positives = 156/279 (55%), Gaps = 1/279 (0%) Query: 35 VKTIGIFLLEPLSTKGHIGNVIEMAIPLMFTGLAVSLLFRANMFNLGAEGIFYFSGVVAS 94 +++ G+ L I + A P++FTGLAV++ FRA +N+GAEG +G VAS Sbjct: 42 LESYGVMFTASLGDSYAITETLVRAAPMIFTGLAVAVAFRAKFWNIGAEGQL-LAGAVAS 100 Query: 95 VLAIHLSLGSWLHPLVAIAAGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFGVGLY 154 + + L L+ AG+ GA+++ +P L+ K+ +++V+SL+ N++++ + Sbjct: 101 CFVGAIPMPGPLAMLLMAIAGAAAGAVVALVPATLRVKFKVDDVVSSLLLNSVIYYALMA 160 Query: 155 LLNYHLRDAKAFANVSFKFEKTAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTKWGYE 214 L+ +D+ + +S E +A + GTR+H G + RT G+ Sbjct: 161 LIEGPWKDSFSGYPISPPIEDSANFPVLIEGTRLHLGVIVALIAAPLIWFLIARTTLGFR 220 Query: 215 LRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGYGLDG 274 +R+TG + E ARY G+ +V++ L++G +AG+ G EV G++ + PGYG G Sbjct: 221 IRVTGESPEAARYGGIHVERVLLSTALMSGALAGLAGVGEVGGVHFQVMSDISPGYGYSG 280 Query: 275 ALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPS 313 +VAMLA+ NPL V+ +A+FLA + GA+ M+R + VP+ Sbjct: 281 IVVAMLARLNPLGVVPAAIFLAAVMTGAEAMSRATGVPA 319 >SMa2367 [R] COG4603 ABC-type uncharacterized transport system, permease component Length = 349 Score = 125 bits (313), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 87/258 (33%), Positives = 138/258 (53%), Gaps = 3/258 (1%) Query: 59 AIPLMFTGLAVSLLFRANMFNLGAEGIFYFSGVVASVLAIHLSLGSWLHPLVAIA--AGS 116 A PL+ TGLA ++ FRA ++N+GAEG FY + + + HL G V + AG+ Sbjct: 65 ASPLILTGLAAAVAFRAKLWNIGAEGQFYLGAIAVAAASSHLFGGLPPPLQVPLLLVAGA 124 Query: 117 IVGALLSAIPGILKAKWNANELVTSLMFNNILFGVGLYLLNYHLRDAKAFA-NVSFKFEK 175 G +L +P L+ +++ +E+VT+L+ N + L++ L+D F S Sbjct: 125 AAGIVLLLVPLWLRLRFSVDEVVTTLLLNFVAVLFVSMLIDGPLKDPMGFGWPQSQPVAD 184 Query: 176 TAQLSKIFPGTRIHTGXXXXXXXXXXAHLFLYRTKWGYELRMTGANREFARYSGMKTAKV 235 A L K+F +R+H G HL RT +G + R G N A ++G+ + Sbjct: 185 AAVLPKLFARSRLHVGLMIALVFAVAVHLVQSRTVFGMQSRAAGLNPAGAVFAGVPLGRT 244 Query: 236 IILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGYGLDGALVAMLAKNNPLSVIASALFL 295 ++ V I+G +AG+ G++EV+G+ PGYG G +VAMLA +PL V+ +ALF Sbjct: 245 LVTVACISGGLAGLAGAIEVMGVQGYVTTDLSPGYGYSGIVVAMLANLHPLGVVLAALFT 304 Query: 296 AYIRIGADLMARLSDVPS 313 A + +GAD M+R +PS Sbjct: 305 AVMFVGADGMSRSMGIPS 322 >STM0104 [K] COG2207 AraC-type DNA-binding domain-containing proteins Length = 281 Score = 115 bits (289), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 0/282 (0%), Positives = 0/282 (0%), Gaps = 23/282 (8%) Query: 49 KGHIGNVIEMA------IPLMFTGLAVSLLFRANMFNLGAEGIFYFSGVVASVLAIHLSL 102 + + + + G + Sbjct: 42 MKGYILNLTIRGEGVINNNGEQFVCRPGDILLFPPGEIHHYGRHPDASEWYHQWVYFRP- 100 Query: 103 GSWLHPLVAIA----AGSIVGALLSAIPGILKAKWNANELVTSLMFNNILFGVGLYLLNY 158 + + ++ + L Sbjct: 101 --RAYWQEWLTWPTIFAQTGFFRPDEARQPHFSELFGQIISAGQGEGRY----SELLAIN 154 Query: 159 HLRDAKAFANVSFKFEKTAQLSKIFP-----GTRIHTGXXXXXXXXXXAHLFLYRTKWGY 213 L + + Sbjct: 155 LLEQLLLRRMAVINESLHPPMDSRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHL 214 Query: 214 ELRMTGANREFARYSGMKTAKVIILVHLIAGFIAGMGGSVEVLGMYSRFQWTSLPGYGLD 273 + G + R + ++L +Y + G Sbjct: 215 FRQQLGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPS 274 Query: 274 GALVAMLAKNNPLSVIASALFLAYIRIGADLMARLSDVPSEM 315 Sbjct: 275 - 315 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.414 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,921,108 Number of extensions: 802402 Number of successful extensions: 2898 Number of sequences better than 1.0e-05: 47 Number of HSP's gapped: 2845 Number of HSP's successfully gapped: 48 Length of query: 348 Length of database: 38,378,431 Length adjustment: 107 Effective length of query: 241 Effective length of database: 26,037,693 Effective search space: 6275084013 Effective search space used: 6275084013 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)