BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0008.p (311 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BMEII0087 [R] COG1079 Uncharacterized ABC-type transport system,... 178 9e-45 mll4174 [R] COG1079 Uncharacterized ABC-type transport system, p... 170 3e-42 SMc04125 [R] COG1079 Uncharacterized ABC-type transport system, ... 154 2e-37 mlr3157 [R] COG1079 Uncharacterized ABC-type transport system, p... 149 6e-36 STM0105 [S] COG0586 Uncharacterized membrane-associated protein 146 4e-35 >BMEII0087 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 303 Score = 178 bits (452), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 113/294 (38%), Positives = 171/294 (58%), Gaps = 10/294 (3%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M ++L IL F ++LRV TP+L AALG +IS+RAG++NIGMEG+MLV+AL V+ SA Sbjct: 1 MTTVLAQILDPHFIGTILRVATPLLLAALGVMISDRAGVLNIGMEGMMLVAALIAVLASA 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 T S + T +I+ G+A+N+ A+ T LYL +GDK Sbjct: 61 ATGSPAVGLLAALVVGALLGWLMSLSVNRLGTDLIMTGIALNIAAAAATTLGLYLATGDK 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 G S +L S LPS+ +P + +I H+LT+ ++LAV V L+ RT GL +R Sbjct: 121 GMSGALKSGALPSLAVPFIGNI----------HVLTFAALLAVPAVSLLMMRTRFGLHLR 170 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 + G +P +A++ G+ ++Q Y+S+GY++ F ++M AGRG+IAIA Sbjct: 171 ATGVDPKSARAAGIQTGRVQMMALILSGLFGGAAGAYLSLGYVTWFAQNMTAGRGFIAIA 230 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVLKIPAELIATLPYVATVIGLIIY 294 AE MG+ T GT + SL+ AA+++A LQ L +P EL+ +PY+ VI L ++ Sbjct: 231 AEVMGQGTAWGTLVASLVLAAAESIAITLQSLGLPFELMQMIPYLVPVIVLTVH 284 >mll4174 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 314 Score = 170 bits (430), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/296 (33%), Positives = 156/296 (52%), Gaps = 5/296 (1%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M+++ I F +++R+ TP+ FA LG + S RAG++N+G+EGIML+ A+TG ++ Sbjct: 1 MSAVFEQIFQVGFLAAIIRIATPLAFATLGEMFSERAGVLNLGIEGIMLLCAMTGFTATS 60 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 + S W FT+ + G+ + +F+SG F+ L+ G + Sbjct: 61 LSGSLWLGVLVAVLTGMLMGALHALFTVALGLSQHVCGIGVTLFSSGLAYFLYRLIFGQQ 120 Query: 121 GSSTSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIR 180 S A K ++ IP+L DIPVLGP + L Y++I+A+ + ++L RTP GL +R Sbjct: 121 --SVPPAIKGFQTLPIPVLSDIPVLGPAVFNQFALVYMAIIAIPLAAFVLYRTPWGLSVR 178 Query: 181 SVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIA 240 VGENP AA S GVSVI ++ ++SM + FT +V+GRGW+AIA Sbjct: 179 MVGENPRAADSAGVSVIATRFQAVILGGALMGLAGAFLSMAQFNAFTFGVVSGRGWVAIA 238 Query: 241 AESMGRSTTVGTALTSLLFGAADALANALQVL---KIPAELIATLPYVATVIGLII 293 GR +A +LLF DAL +Q IP E LP++ T++ + + Sbjct: 239 LVVFGRWDPWRSAGAALLFAFVDALQLRMQASGLGHIPYEAFLMLPFIFTIVAMAV 294 >SMc04125 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 323 Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/288 (34%), Positives = 152/288 (52%), Gaps = 14/288 (4%) Query: 16 SVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYTHSAWXXXXXXXXX 75 S +RV+ P++FAAL L + RAG+ +IG+EG ML +A +A T S W Sbjct: 13 STIRVSVPLVFAALAGLFTERAGVFDIGLEGKMLGAAFAAGAAAAVTQSVWVGLGAAILV 72 Query: 76 XXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGSSTSLASKV-LPSV 134 + ++ + + I+ GVAIN +G TV + G + +LA ++ Sbjct: 73 SVALSLVHGYASITQRGNQIVSGVAINFIVAGSTVILGEAWFRQGGRTPALAEGARFQTI 132 Query: 135 EIP---LLKDIPVLGPI----LSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSVGENPH 187 P ++++IPVLGP+ LSGH +LTYL+ V + +++L RT GLR+R+VGENP Sbjct: 133 NFPDADMIREIPVLGPVYADLLSGHFLLTYLAFAMVPISWWILYRTRFGLRLRAVGENPG 192 Query: 188 AAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAESMGRS 247 A + G+SVI ++Y Y+S+ + F + M AG+G+IA+AA + Sbjct: 193 AVDTAGISVIWLRYRAVICCGILCGFAGAYLSLAMTAGFVKGMTAGKGYIALAALIFAKW 252 Query: 248 TTVGTALTSLLFGAADALANALQ------VLKIPAELIATLPYVATVI 289 + LLFG DALA LQ V ++P +L+ LPY+ TVI Sbjct: 253 RPLNIMFACLLFGFLDALAIRLQGTPLPLVGQVPVQLMQALPYILTVI 300 >mlr3157 [R] COG1079 Uncharacterized ABC-type transport system, permease component Length = 323 Score = 149 bits (376), Expect = 6e-36, Method: Compositional matrix adjust. Identities = 101/305 (33%), Positives = 153/305 (50%), Gaps = 21/305 (6%) Query: 1 MNSLLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSA 60 M+ + ++ D S +R++ P+L A L L S R+GI +IG+EG MLV A G ++ Sbjct: 1 MDVFIAIVQILD---STIRLSVPLLLACLAGLFSERSGIFDIGLEGKMLVGAFAGAAAAS 57 Query: 61 YTHSAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDK 120 HSA+ F ++ + + I+ GVAIN A+G T+ + Sbjct: 58 VFHSAFIGLGMAILISVAFAMVHGFASITHRGNQIVSGVAINFIAAGSTIILGQAWFQQG 117 Query: 121 GSSTSLASK------VLPSVEIPLLKDIPVLGPI----LSGHHILTYLSILAVLVVYYLL 170 G + +L V P E ++D+P++GPI +SGH +L YL+ L V +++L Sbjct: 118 GRTPALQPGERFDAIVWPGAEA--VRDVPIIGPIYAELISGHSLLVYLAFLMVPFTWWVL 175 Query: 171 NRTPLGLRIRSVGENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDM 230 RT GLR+R+VGENP A + G+SV ++Y Y+SM F +DM Sbjct: 176 FRTRFGLRLRAVGENPAAVDTAGISVAWLRYRALICTGILTGVAGAYLSMVQNGGFVKDM 235 Query: 231 VAGRGWIAIAAESMGRSTTVGTALTSLLFGAADALANALQ------VLKIPAELIATLPY 284 AG+G+IA+AA + V LLFG DA A LQ + K+P + + LPY Sbjct: 236 TAGKGYIALAALIFAKWKPVNAMFACLLFGFLDAAAIRLQGSPLPIIGKVPVQFMQALPY 295 Query: 285 VATVI 289 + TVI Sbjct: 296 ILTVI 300 >STM0105 [S] COG0586 Uncharacterized membrane-associated protein Length = 255 Score = 146 bits (369), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 0/292 (0%), Positives = 0/292 (0%), Gaps = 8/292 (2%) Query: 4 LLNVILTTDFAFSVLRVTTPILFAALGALISNRAGIINIGMEGIMLVSALTGVIVSAYTH 63 T +VL V A +G ++ + +G + Sbjct: 7 HFITQSTLYSLIAVLLVAFLESLALVGLILPGTVLMAGLGALIGSGELNFWHAWLVGIIG 66 Query: 64 SAWXXXXXXXXXXXXXXXXXXFFTLKFKTHIILGGVAINMFASGGTVFILYLLSGDKGSS 123 + +K ++ S T+ + + + Sbjct: 67 CLMGDWISFWLGWRFKKPLHRWSFMKKNKSLLDKTEHALHQHSMFTILVGRFVGPTRPLV 126 Query: 124 TSLASKVLPSVEIPLLKDIPVLGPILSGHHILTYLSILAVLVVYYLLNRTPLGLRIRSVG 183 +A + + + ++G +L + + ++ + Sbjct: 127 PMVAG--MLDLPVAKFIGPNLIGCLLWPPFYFLPGILAGAAIDIPSDMQSGDFKWLLLAT 184 Query: 184 ENPHAAQSVGVSVIKIQYTXXXXXXXXXXXXXXYMSMGYLSLFTRDMVAGRGWIAIAAES 243 + + + L+L + Sbjct: 185 ALLLWVGGWLCWRLWRSGKAAVDRLTAYFPRSRLLYLAPLTLGIGVVALVVLVRHPLMPV 244 Query: 244 MGRSTTVGTALTSLLFGAADALANALQ---VLKIPA---ELIATLPYVATVI 289 Sbjct: 245 296 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.324 0.139 0.390 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 17,578,908 Number of extensions: 636453 Number of successful extensions: 3106 Number of sequences better than 1.0e-05: 40 Number of HSP's gapped: 3030 Number of HSP's successfully gapped: 41 Length of query: 311 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 205 Effective length of database: 26,153,027 Effective search space: 5361370535 Effective search space used: 5361370535 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 116 (49.3 bits)