BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0382.0003.p (281 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value PA5505 [P] COG1464 ABC-type metal ion transport system, periplas... 201 1e-51 PA3931 [P] COG1464 ABC-type metal ion transport system, periplas... 183 2e-46 DR1358 [P] COG1464 ABC-type metal ion transport system, periplas... 166 6e-41 DR1359 [P] COG1464 ABC-type metal ion transport system, periplas... 160 2e-39 STM0245 [P] COG1464 ABC-type metal ion transport system, peripla... 152 8e-37 >PA5505 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 17/236 (7%), Positives = 32/236 (13%) Query: 46 IKVASLIPPMTDILDIVKPLLKEDGVDMEVVILSDNVQPNEALANKEVDANFFQHVPYME 105 + K V + L + + Sbjct: 25 ETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKI 84 Query: 106 QFNASKGSKLVEVQPVYDAIYGGYSKRYKSIADLPEGATLVMANDPSNTGRSLQMFAKAG 165 + E + D Y + Y + A V T + Sbjct: 85 NPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTL 144 Query: 166 LIKLKEGVGIQATQADITENAKKFKFQEXXXXXXXXXXXXXXXXXXTPAYASPLGLTPKK 225 + F K Sbjct: 145 RKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKG 204 Query: 226 DALITEGSDSEFTITLVAREDNKDSDAIQKLAKRISGPEVKKFLEDNYADIALPAF 281 E + E+ K A + + L + Sbjct: 205 HKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVED 260 >PA3931 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 183 bits (465), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 18/237 (7%), Positives = 45/237 (18%) Query: 45 KIKVASLIPPMTDILDIVKPLLKEDGVDMEVVILSDNVQPNEALANKEVDANFFQHVPYM 104 I+ A + + ++ V M +V + + + NF + Sbjct: 23 SIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKE 82 Query: 105 EQFNASKGSKLVEVQPVYDAIYGGYSKRYKSIADLPEGATLVMANDPSNTGRSLQMFAKA 164 + A + + + + +L + + + Sbjct: 83 KINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLD 142 Query: 165 GLIKLKEGVGIQATQADITENAKKFKFQEXXXXXXXXXXXXXXXXXXTPAYASPLGLTPK 224 L K + + + + P Sbjct: 143 TLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGI 202 Query: 225 KDALITEGSDSEFTITLVAREDNKDSDAIQKLAKRISGPEVKKFLEDNYADIALPAF 281 K E + T +N A + E + Sbjct: 203 KGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRFGVE 259 >DR1358 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 166 bits (419), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 13/236 (5%), Positives = 40/236 (16%) Query: 46 IKVASLIPPMTDILDIVKPLLKEDGVDMEVVILSDNVQPNEALANKEVDANFFQHVPYME 105 + K + + + + D + + Sbjct: 21 ADSIETAVKSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAII 80 Query: 106 QFNASKGSKLVEVQPVYDAIYGGYSKRYKSIADLPEGATLVMANDPSNTGRSLQMFAKAG 165 + + V Y + E L Sbjct: 81 KEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGM 140 Query: 166 LIKLKEGVGIQATQADITENAKKFKFQEXXXXXXXXXXXXXXXXXXTPAYASPLGLTPKK 225 L L++ + E + + + Sbjct: 141 LDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFED 200 Query: 226 DALITEGSDSEFTITLVAREDNKDSDAIQKLAKRISGPEVKKFLEDNYADIALPAF 281 + + E + ++ + I+ +V++ + F Sbjct: 201 GIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRF 256 >DR1359 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 160 bits (405), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 13/228 (5%), Positives = 40/228 (17%) Query: 54 PMTDILDIVKPLLKEDGVDMEVVILSDNVQPNEALANKEVDANFFQHVPYMEQFNASKGS 113 + K + + + + D + + + + Sbjct: 29 KSELVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQDVLGDLMSRNFIDAIIKEKINPAG 88 Query: 114 KLVEVQPVYDAIYGGYSKRYKSIADLPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGV 173 V Y + E L L L++ Sbjct: 89 APTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEVEKPIVEVTDADVDGMLDTLRKQQ 148 Query: 174 GIQATQADITENAKKFKFQEXXXXXXXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGS 233 + E + + + + Sbjct: 149 ATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDFVLAMGQGRMIPGFEDGIKGHKAG 208 Query: 234 DSEFTITLVAREDNKDSDAIQKLAKRISGPEVKKFLEDNYADIALPAF 281 + E + ++ + I+ +V++ + F Sbjct: 209 EEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEERELPELTAEFIKRF 256 >STM0245 [P] COG1464 ABC-type metal ion transport system, periplasmic component/surface antigen Length = 432 Score = 152 bits (383), Expect = 8e-37, Method: Compositional matrix adjust. Identities = 13/250 (5%), Positives = 37/250 (14%), Gaps = 18/250 (7%) Query: 19 AGCGNNKKXXXXXXXXXXXXXXXXXVKIKVASLIPPMTDILDIVKPLLKED-GVDMEVVI 77 A + VA + V + Sbjct: 21 ADSIETAVKSE---------------LVNVAKKVRIDGFRKGKVPMNIVAQRYGASVRQD 65 Query: 78 LSDNVQPNEALANKEVDANFFQHVPYMEQFNASKGSKLVEVQPVYDAIYGGYSKRYKSIA 137 + ++ + + P G Sbjct: 66 VLGDLMSRNFIDAIIKEKINPAGAPTYVPGEYKLGEDFTYSVEFEVYPEVELQGLEAIEV 125 Query: 138 DLPEGATLVMANDPSNTGRSLQMFAKAGLIKLKEGVGIQATQADITENAKKFKFQEXXXX 197 + P D Q E + + ++F+ + Sbjct: 126 EKPIVEVTDADVDGMLDTLRKQQATWKEKDGAVEAEDRVTIDFTGSVDGEEFEGGKASDF 185 Query: 198 X--XXXXXXXXXXXXXTPAYASPLGLTPKKDALITEGSDSEFTITLVAREDNKDSDAIQK 255 + + T +++ + K + + Sbjct: 186 VLAMGQGRMIPGFEDGIKGHKAGEEFTIDVTFPEEYHAENLKGKAAKFAINLKKVEEREL 245 Query: 256 LAKRISGPEV 265 + Sbjct: 246 PELTAEFIKR 255 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,960,444 Number of extensions: 572280 Number of successful extensions: 1066 Number of sequences better than 1.0e-05: 35 Number of HSP's gapped: 1026 Number of HSP's successfully gapped: 36 Length of query: 281 Length of database: 38,378,431 Length adjustment: 105 Effective length of query: 176 Effective length of database: 26,268,361 Effective search space: 4623231536 Effective search space used: 4623231536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 115 (48.9 bits)