BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0381.0002.p (202 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_yfmM [R] COG0488 ATPase components of ABC transporters with d... 276 2e-74 CAC3339 [R] COG0488 ATPase components of ABC transporters with d... 252 3e-67 L101706 [R] COG0488 ATPase components of ABC transporters with d... 244 7e-65 SPy1206 [R] COG0488 ATPase components of ABC transporters with d... 228 4e-60 SP0770 [R] COG0488 ATPase components of ABC transporters with du... 228 6e-60 >BS_yfmM [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains Length = 518 Score = 276 bits (705), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 126/168 (75%), Positives = 152/168 (90%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL+V+ LSHGFGDRAIF++VSFRLLKGEH+GLIGANGEGKSTFMNIITGKL+PDEGKV Sbjct: 1 MSILSVKDLSHGFGDRAIFNNVSFRLLKGEHVGLIGANGEGKSTFMNIITGKLEPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+K +R GYLDQH VL KG+SIRDVL+ AF YLF ME+EMN++Y +MG+ P+ELE++L Sbjct: 61 EWSKNVRVGYLDQHTVLEKGKSIRDVLKDAFHYLFAMEEEMNEIYNKMGEADPDELEKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG IQD LTN DFY+ID+K++E ARGLGL+DIGL++DV DLSGGQR Sbjct: 121 EEVGVIQDALTNNDFYVIDSKVEEIARGLGLSDIGLERDVTDLSGGQR 168 Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 22/61 (36%), Positives = 36/61 (59%) Query: 15 DRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKVEWAKRMRAGYLDQH 74 D + ++ R+ +G+ I L GANG GK+T + + G++QP EG VE + + GY +Q Sbjct: 336 DSPLSRPLNLRMERGQKIALYGANGIGKTTLLKSLLGEIQPLEGSVERGEHIYTGYFEQE 395 Query: 75 A 75 Sbjct: 396 V 396 >CAC3339 [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains Length = 518 Score = 252 bits (644), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 115/168 (68%), Positives = 145/168 (86%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSILNV+ ++HGFGDRAIF DVSFRLLKGEH+GL+GANGEGKSTFM+IITGKL PDEG + Sbjct: 1 MSILNVKNVNHGFGDRAIFEDVSFRLLKGEHVGLVGANGEGKSTFMSIITGKLMPDEGTI 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+ +R GY+DQHA L KG++I+DVL+ AF+YLFDME M ++ +M + S +EL+++L Sbjct: 61 EWSNNVRVGYMDQHASLQKGKTIKDVLKDAFKYLFDMEANMMEITDKMAEASEDELQKLL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 +++GTIQDTL N DFY+ID KI+E A+GLG+TDIGLDKDV DLSGGQR Sbjct: 121 DEMGTIQDTLDNNDFYVIDVKIEEVAKGLGITDIGLDKDVADLSGGQR 168 >L101706 [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains Length = 517 Score = 244 bits (623), Expect = 7e-65, Method: Compositional matrix adjust. Identities = 116/168 (69%), Positives = 140/168 (83%), Gaps = 1/168 (0%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSILNV+ LSHGFGDRAIF DVSFRLLKGEHIG +GANGEGKSTFMNIITG L PDEGKV Sbjct: 1 MSILNVKNLSHGFGDRAIFEDVSFRLLKGEHIGFVGANGEGKSTFMNIITGTLVPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 W+K+ R GY+DQHAVL KG++ R+ L AFQYLFD+E ++ND Y +M ++S +E+ L Sbjct: 61 IWSKKHRVGYMDQHAVLGKGKTTREALAEAFQYLFDIEAQINDTYMKMAEMSEDEMNAAL 120 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG +Q+ L N DFY+IDAK++ETARGLGLT + LDKDV +LSGGQR Sbjct: 121 ENVGELQEELDNSDFYLIDAKVEETARGLGLTPL-LDKDVAELSGGQR 167 >SPy1206 [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains Length = 521 Score = 228 bits (582), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 108/168 (64%), Positives = 133/168 (79%), Gaps = 1/168 (0%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL V++LSHGFGDRAIF +VSFRLLKGEHIGL+GANGEGKSTFM+I+TG LQPDEGKV Sbjct: 8 MSILEVKQLSHGFGDRAIFENVSFRLLKGEHIGLVGANGEGKSTFMSIVTGHLQPDEGKV 67 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+K + AGYLDQH VL GQ++RDVLR AF LF E +N++Y M D ++ ++ Sbjct: 68 EWSKYVTAGYLDQHTVLESGQTVRDVLRTAFDELFKTENRINEIYASMAD-DKADIAVLM 126 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG +QD L ++DFY +DAKIDE AR LG+ D G++ DV LSGGQR Sbjct: 127 EEVGELQDRLESRDFYTLDAKIDEVARALGVMDFGMESDVTSLSGGQR 174 >SP0770 [R] COG0488 ATPase components of ABC transporters with duplicated ATPase domains Length = 513 Score = 228 bits (580), Expect = 6e-60, Method: Compositional matrix adjust. Identities = 109/168 (64%), Positives = 135/168 (80%), Gaps = 1/168 (0%) Query: 1 MSILNVERLSHGFGDRAIFSDVSFRLLKGEHIGLIGANGEGKSTFMNIITGKLQPDEGKV 60 MSIL V+ LSHGFGDRAIF DVSFRLLKGEHIGL+GANGEGKSTFM+I+TGK+ PDEGKV Sbjct: 1 MSILEVKNLSHGFGDRAIFEDVSFRLLKGEHIGLVGANGEGKSTFMSIVTGKMLPDEGKV 60 Query: 61 EWAKRMRAGYLDQHAVLTKGQSIRDVLRGAFQYLFDMEQEMNDMYGRMGDVSPEELEQML 120 EW+K + AGYLDQH+VL + QS+RDVLR AF LF E +ND+Y +M + +++ ++ Sbjct: 61 EWSKYVTAGYLDQHSVLAERQSVRDVLRTAFDELFKAEARINDLYMKMAE-DGADVDALM 119 Query: 121 EDVGTIQDTLTNQDFYMIDAKIDETARGLGLTDIGLDKDVHDLSGGQR 168 E+VG +QD L ++DFY +DAKIDE AR LG+ D G+D DV LSGGQR Sbjct: 120 EEVGELQDRLESRDFYTLDAKIDEVARALGVMDFGMDTDVTSLSGGQR 167 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.321 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,137,539 Number of extensions: 673547 Number of successful extensions: 14201 Number of sequences better than 1.0e-05: 295 Number of HSP's gapped: 14192 Number of HSP's successfully gapped: 390 Length of query: 202 Length of database: 38,378,431 Length adjustment: 101 Effective length of query: 101 Effective length of database: 26,729,697 Effective search space: 2699699397 Effective search space used: 2699699397 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 113 (48.1 bits)