BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0023.p (543 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 197 4e-50 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 59 3e-08 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 55 4e-07 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 197 bits (501), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 141/488 (28%), Positives = 245/488 (50%), Gaps = 42/488 (8%) Query: 79 VLQQMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFYAAGLTTAEQMNYGEQGILI 138 +LQ++++ TG+ +++ N D F K+NL +SGD PD + G + + MN+ ++G++I Sbjct: 68 ILQRLEKETGVHIDWTNYQSD-FAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKGVII 126 Query: 139 PLEDLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSLPVVE------LSQHWYRNPMWYN 192 P+EDLID+Y PN K +L++ P+ + +TAPDGHIYS P +E S H + W N Sbjct: 127 PVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVNDMAWIN 186 Query: 193 GDFLKALNIDKLPETTEELYTYLKRVKEEDPNGNGVADEIPISSVTTAAANLRDIRTWLL 252 D+LK L ++ +P+TT++L L+ K DPNGNG ADEIP S ++ N + +L Sbjct: 187 KDWLKKLGLE-MPKTTDDLIKVLEAFKNGDPNGNGEADEIPFSFIS---GNGNEDFKFLF 242 Query: 253 GAFGI--YEEEIYVDDADKVHYTPLEEGYKEYLTYMNRLWSEELLDHESFSQTAEQKKAK 310 AFGI ++ + V + KV +T + YKE + ++ +L + L+D E+F AK Sbjct: 243 AAFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAFEHDWNSYIAK 302 Query: 311 AQNNRVALFSDWHAYMTKGGEQSTADPMFAPVRSESVAAPAIAKNRGI--TTGAFAITES 368 + + ++ W G +S PV + +A+ G+ IT Sbjct: 303 GHDQKFGVYFTWDKNNVTGSNESYD---VLPVLAGPSGQKHVARTNGMGFARDKMVITSV 359 Query: 369 NPQPEASMRWVDYLYSYEGALFFNKGPEG-----TLWEYTDKENRVKQYLPVPDGKEMED 423 N E + +W+D Y+ ++ N G G ++E N +K +LP+ +G + Sbjct: 360 NKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLK-HLPL-NGTAPAE 417 Query: 424 FRATLTPNYGIPAPTLSMDDINKGLKTDFDLWVEQETKQKL-LDKGARIP-------FPA 475 R + P +D + T + + K +L L K +P +P Sbjct: 418 LRQKTE----VGGPLAILDSYYGKVTT-----MPDDAKWRLDLIKEYYVPYMSNVNNYPR 468 Query: 476 LFLTVEEQTEISSLNSDLSTYVKQMEAKFITGAEPLTGWDNYVATVKKMGGERVAEINQA 535 +F+T E+ +I+ + +D++ Y+ + A++I T WD+Y ++K G I Q Sbjct: 469 VFMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQK 528 Query: 536 AYDRWKSN 543 YD++++N Sbjct: 529 YYDQYQAN 536 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 58.5 bits (140), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 73/315 (23%), Positives = 131/315 (41%), Gaps = 37/315 (11%) Query: 79 VLQQMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFYAAGLTTAEQMNYGEQGILI 138 V+++++E+T L+ P E + N ASG+ P + T+ +N G Sbjct: 70 VIKEIEELTNTNLDLIWVPDAVKEDRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFW 129 Query: 139 PLEDLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSLPVVELSQHWYRNPMWYNGDFLKA 198 + +DE+ PN L E N + ++++ DG IY + + R + D+L+ Sbjct: 130 EIGPYLDEF-PN---LSEMNETILENVSV-DGKIYG---IYRERPLSRQGVVIRQDWLEN 181 Query: 199 LNIDKLPETTEELYTYLKRVKEEDPNGNGVADEIPISSVTTAAANLRDIRTWLLGAFGIY 258 L + ++P EELY + +DPNG+G D + + D + GAF Sbjct: 182 LGL-EMPTNLEELYEVARAFTYDDPNGSGADDTVGFT----------DRNDLIFGAFKTL 230 Query: 259 EE------EIYVDDADKVHYTPLEEGYKEYLTYMNRLWSEELLDHESFSQTAEQKKAKAQ 312 E DD K+ + + Y E + YM L+ E L++ E + EQ++ Sbjct: 231 ASYHGTPNEWGFDDEGKLMPEFMTDEYVETMNYMKSLYDEGLINTEFPVTSKEQQQELFM 290 Query: 313 NNRVALF----SDWHAYMTKGGEQSTADPMFAPVRSESVAAPAIAKNR----GITTGAFA 364 R ++ D K + +P + +A P ++R G G FA Sbjct: 291 TGRAGIYVGNMVDARNLRDKAKD---INPEMEVAITNRIAGPD-GEDRVWAQGGHNGIFA 346 Query: 365 ITESNPQPEASMRWV 379 I +S+ + EA ++ + Sbjct: 347 IPKSSVETEAELKRI 361 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 54.7 bits (130), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 48/175 (27%), Positives = 87/175 (49%), Gaps = 19/175 (10%) Query: 61 TLTMMAPDVGIQN-WENMPVLQQMQEMTGITLEYQNAPKDSFETKKNLVFASGDYPDIFY 119 T+ +MAP + ++ + P L+ +++ TG ++ P S+ K N+V ASG+ P Sbjct: 37 TIKIMAPLLSPESPSDKSPSLKALEKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIV 96 Query: 120 ----AAGLTTAEQMNYGEQGILIPLEDLIDEYAPNFKALLEDNPDVRKSITAPDGHIYSL 175 +AG + + G L P Y ++K L + + + K+ ++ +G +Y Sbjct: 97 IKDKSAGFIKS--VKAGAFWELSP-------YLKDYKNLSQADEKILKN-SSVNGEVYG- 145 Query: 176 PVVELSQHWYRNPMWYNGDFLKALNIDKLPETTEELYTYLKRVKEEDPNGNGVAD 230 + ++ R M D+LK + +D +PET ++ Y LK KE+DP+GNG D Sbjct: 146 --IYRTRDLIRACMIIRTDWLKNVGLD-MPETLDDFYEVLKAFKEKDPDGNGKDD 197 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 40,379,726 Number of extensions: 1797131 Number of successful extensions: 2246 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 2240 Number of HSP's successfully gapped: 4 Length of query: 543 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 432 Effective length of database: 25,576,357 Effective search space: 11048986224 Effective search space used: 11048986224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 118 (50.1 bits)