BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0022.p (299 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 244 1e-64 SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 231 9e-61 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 231 1e-60 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 218 7e-57 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 199 5e-51 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 244 bits (623), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 120/268 (44%), Positives = 182/268 (67%), Gaps = 10/268 (3%) Query: 32 ILSASISSPQDVNSGAMWLFPKNVTLDGYKLVFENPKIWNGYLNTIIYTVLGTLLNLAVT 91 I++ S ++ ++ + ++FPK TLD YK VF P +I TV+GT + L T Sbjct: 38 IIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQLFFT 97 Query: 92 LPASYALSRSDFVGRQLFMAFILFTMFFSGGLVPTYLLVKNLGLINSMGALILPVAASVW 151 +Y L++ GR L + ++F+M FSGG++PTYL+VK+LGL+++ ALILP+A + + Sbjct: 98 FTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMAINPF 157 Query: 152 NIVVARTFFQTTIPKELQEAAHIDGCTNLKLFIRIILPLSAPIVAVMALFYGVGHWNSYF 211 N+++ + FFQ +P+EL+E+A IDGC+ + +F RI LPLS P++A ALFY VG WN +F Sbjct: 158 NLIIIKNFFQ-QLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWNDFF 216 Query: 212 PSLIYLNDEAKYPLQMVLRQILVLQEMSAETTGAAINGEVAMAMNSKAETASLIKYGVIV 271 +L+Y+ND AK+PLQMVLRQ+ +L +++A NG+ M + IK VIV Sbjct: 217 HALLYINDSAKWPLQMVLRQVTILSDLTAT------NGD---TMQNAVPPEQGIKLAVIV 267 Query: 272 VSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 ++TLPI+AVYPFLQ++F +G++IGSVKG Sbjct: 268 IATLPILAVYPFLQKHFAKGMLIGSVKG 295 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 231 bits (590), Expect = 9e-61, Method: Compositional matrix adjust. Identities = 118/268 (44%), Positives = 179/268 (66%), Gaps = 7/268 (2%) Query: 32 ILSASISSPQDVNSGAMWLFPKNVTLDGYKLVFENPKIWNGYLNTIIYTVLGTLLNLAVT 91 I+ AS P+ + S + P + T++GY+ VF + I G++N+++Y+ L + ++ Sbjct: 45 IVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLS 104 Query: 92 LPASYALSRSDFVGRQLFMAFILFTMFFSGGLVPTYLLVKNLGLINSMGALILPVAASVW 151 + +Y LS+ D VGR+ F++ TMFF GGLVPTYLLVK LG++N+ A+I+P A +VW Sbjct: 105 VFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVW 164 Query: 152 NIVVARTFFQTTIPKELQEAAHIDGCTNLKLFIRIILPLSAPIVAVMALFYGVGHWNSYF 211 NI++AR +FQ +P+EL EAA IDG +L++F +I+LPL+ PI+ V+ L+ VG WNSYF Sbjct: 165 NIILARAYFQ-GLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYF 223 Query: 212 PSLIYLNDEAKYPLQMVLRQILVLQEMSAETTGAAINGEVAMAMNSKAETASLIKYGVIV 271 ++IY+ D PLQ+VLR+IL+ + + GA AMN A LIKY IV Sbjct: 224 DAMIYIKDPNLEPLQLVLRKILIQSQPGQDMIGA------QAAMNEMKRLAELIKYATIV 277 Query: 272 VSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 +S+LP++ +YPF Q+YF +G+M GS+KG Sbjct: 278 ISSLPLIVMYPFFQKYFDKGIMAGSLKG 305 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 231 bits (589), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 109/268 (40%), Positives = 182/268 (67%), Gaps = 9/268 (3%) Query: 32 ILSASISSPQDVNSGAMWLFPKNVTLDGYKLVFENPKIWNGYLNTIIYTVLGTLLNLAVT 91 +++AS ++ ++V S L P +LD Y+ +F I+ L ++ TV+GT +++ ++ Sbjct: 28 VIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDIIYKSLLVSVFVTVIGTAVSMFLS 87 Query: 92 LPASYALSRSDFVGRQLFMAFILFTMFFSGGLVPTYLLVKNLGLINSMGALILPVAASVW 151 +Y LSR D +GRQ M ++FTM FSGG++PT+L+VK+LGL++S ALILP A + + Sbjct: 88 SLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFLVVKSLGLLDSYWALILPTAINAF 147 Query: 152 NIVVARTFFQTTIPKELQEAAHIDGCTNLKLFIRIILPLSAPIVAVMALFYGVGHWNSYF 211 N+++ + FFQ IP L+E+A IDGC +L +F +I+LPLS P +A ++LFY V +WN+Y Sbjct: 148 NLIILKNFFQ-NIPSSLEESAKIDGCNDLGIFFKIVLPLSLPAIATISLFYAVTYWNTYM 206 Query: 212 PSLIYLNDEAKYPLQMVLRQILVLQEMSAETTGAAINGEVAMAMNSKAETASLIKYGVIV 271 +++YLND AK+P+Q++LRQI+++ + + G+++ + IK VIV Sbjct: 207 TAILYLNDSAKWPIQVLLRQIVIVS--------SGMQGDMSEMGSGSPPPEQTIKMAVIV 258 Query: 272 VSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 V+T+P++ VYPF+Q++F +G ++GSVKG Sbjct: 259 VATIPVLLVYPFIQKHFAKGALLGSVKG 286 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 218 bits (556), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 110/298 (36%), Positives = 185/298 (62%), Gaps = 8/298 (2%) Query: 2 KESRGDKLFLISTXXXXXXXXXXXXXXXXXILSASISSPQDVNSGAMWLFPKNVTLDGYK 61 +S G ++F I I++ S +S ++V LFP +LD Y+ Sbjct: 4 DQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYR 63 Query: 62 LVFENPKIWNGYLNTIIYTVLGTLLNLAVTLPASYALSRSDFVGRQLFMAFILFTMFFSG 121 +F I+ + +I+ TV+GT ++ +T +Y LSR D GR++ M ++FTM FSG Sbjct: 64 YIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSG 123 Query: 122 GLVPTYLLVKNLGLINSMGALILPVAASVWNIVVARTFFQTTIPKELQEAAHIDGCTNLK 181 G++PT+L+V++LGL+++ ALI+P A + +N+++ + FFQ IP+ L+E+A IDGC ++ Sbjct: 124 GMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQ-NIPESLEESAKIDGCNDVG 182 Query: 182 LFIRIILPLSAPIVAVMALFYGVGHWNSYFPSLIYLNDEAKYPLQMVLRQILVLQEMSAE 241 +F RI+ PLS P +A ++LFY V +WN++ +++YLND + +P+Q++LRQI++ MS+ Sbjct: 183 IFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVI---MSSG 239 Query: 242 TTGAAINGEVAMAMNSKAETASLIKYGVIVVSTLPIVAVYPFLQRYFVQGVMIGSVKG 299 G M + IK VIVV+T+P++ VYPF+Q++F +G ++GSVKG Sbjct: 240 MQGDLTELGAGFVMPPEQT----IKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVKG 293 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 199 bits (505), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 167/269 (62%), Gaps = 12/269 (4%) Query: 32 ILSASISSPQDVNSGAMWLFPKNVTLDGYKLVFENPKIWNGYLNTIIYTVLGTLLNLAVT 91 I + S+S + + P + TLD Y+ N +L +++ VLGT++++ Sbjct: 34 IFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDNFIRSFLISVVRVVLGTVISMGAM 93 Query: 92 LPASYALSRSD--FVGRQLFMAFILFTMFFSGGLVPTYLLVKNLGLINSMGALILPVAAS 149 L A+YALS+ D F GR+ ++ F + TM F+GGLVPTY++V LGL N++ AL+LP A + Sbjct: 94 LCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPTYMVVTGLGLTNTIWALVLPPAIN 153 Query: 150 VWNIVVARTFFQTTIPKELQEAAHIDGCTNLKLFIRIILPLSAPIVAVMALFYGVGHWNS 209 +N+++ FF+T +PK L+E+A IDG + ++F++I LP+S P +A ++LF V HWNS Sbjct: 154 AFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKIYLPISVPAIATVSLFTMVFHWNS 213 Query: 210 YFPSLIYLNDEAKYPLQMVLRQILVLQEMSAETTGAAINGEVAMAMNSKAETASLIKYGV 269 +F +IY ND YPLQ L+ I+V Q+ S T + E ++ + A+ Sbjct: 214 WFDGMIYNNDARNYPLQTFLQTIVVQQDFSQIT-----DAETLRNLSQRTVQAAQ----- 263 Query: 270 IVVSTLPIVAVYPFLQRYFVQGVMIGSVK 298 I ++ LP++ VYPF+Q+YFV+G+++G+ K Sbjct: 264 IFIAALPMLIVYPFIQKYFVKGIVLGAEK 292 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.325 0.139 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,047,606 Number of extensions: 694418 Number of successful extensions: 4007 Number of sequences better than 1.0e-05: 156 Number of HSP's gapped: 3752 Number of HSP's successfully gapped: 156 Length of query: 299 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 193 Effective length of database: 26,153,027 Effective search space: 5047534211 Effective search space used: 5047534211 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 115 (48.9 bits)