BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0021.p (304 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 258 8e-69 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 243 2e-64 BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 234 1e-61 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 230 2e-60 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 226 4e-59 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 258 bits (659), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 136/297 (45%), Positives = 188/297 (63%), Gaps = 2/297 (0%) Query: 6 TLGKRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFER 65 +L +RI + L L P L+ IF Y PMYG+ IAFK++ P KGI GS W+GF F + Sbjct: 9 SLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDWIGFSEFTK 68 Query: 66 FFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISV 125 F +S F LL NT +S Y L +GF PIILA+ N++ + KK +Q + YAP+FISV Sbjct: 69 FISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLILYAPNFISV 128 Query: 126 VVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYL 185 VV+ GMI F S G I + G + A+FLT+P +F+ +Y+FSG+WQ GW + +Y Sbjct: 129 VVIVGMIFLFFS-VGGPINNFLSMFGMK-ADFLTNPDFFRPLYIFSGIWQGMGWASTLYT 186 Query: 186 AALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQ 245 A L VDP L EAA +DGA+ +R+ HI++P + P + +EK L+Q Sbjct: 187 ATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNVGYEKAFLMQ 246 Query: 246 NSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENS 302 SLN+ S++ISTYVY+ GLV+ YS+STAVGLFN+V+NV+LLV VN+I KR + Sbjct: 247 TSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVKRMNNGE 303 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 243 bits (621), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 120/297 (40%), Positives = 184/297 (61%), Gaps = 3/297 (1%) Query: 4 NKTLGKRIW---QNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGF 60 + L K+ W + W+L++ + PAL+ LIF YGPM+GI +AF+++ P G TGS WVG Sbjct: 14 ERKLKKQKWNFRRTWQLHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLGFTGSEWVGL 73 Query: 61 DHFERFFNSYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAP 120 HF F + ++WNT IS ++ G +PII+AL NE+ K++VQT+ Y P Sbjct: 74 QHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKRTVQTIIYLP 133 Query: 121 HFISVVVMAGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWG 180 +F+S V++ G++I LSP G++ + + G P FL WF+T V S +W+ TG+ Sbjct: 134 YFLSWVILGGILIDVLSPDGGIVNQALGLFGIDPIFFLGSNDWFRTTVVISDLWKETGFN 193 Query: 181 TIIYLAALSGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEK 240 TI++LAA++ V+P L+EAA+VDGA+R K+ LHI LP ++P I F++ Sbjct: 194 TIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSLGNILNAGFDQ 253 Query: 241 ILLLQNSLNMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKR 297 I L N L + D+I TYVYR LVN +S+ TAVGLF S+++++L++ R+A + Sbjct: 254 IFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIIIGYRLAYK 310 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 234 bits (598), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 124/296 (41%), Positives = 182/296 (61%) Query: 9 KRIWQNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFERFFN 68 KRI++N LYL + P L+YFLIF Y PM+G+ IAF+++ P G+TGS WVGF HFER F Sbjct: 30 KRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQDYQPFLGVTGSEWVGFKHFERLFT 89 Query: 69 SYFFWDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISVVVM 128 F+ LL NT + Y L FP+PIILA+ NE+R FK+ VQT+ Y PHF+S V++ Sbjct: 90 EPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIRLMVFKRFVQTMIYIPHFMSWVIV 149 Query: 129 AGMIITFLSPSSGMIVRVIEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYLAAL 188 + + G+I +I + + FL WF+ +Y+ +W+ GW TIIY AA+ Sbjct: 150 VSLTYVLFTTDGGVINEIIYSITGKNVNFLMSEDWFRPLYILQVIWREAGWATIIYFAAI 209 Query: 189 SGVDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQNSL 248 + +DP L+EAA +DGA+R +++ HI LP I I FE + L+ N++ Sbjct: 210 AAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIVVLLILKIGDILELGFEHVFLMLNAM 269 Query: 249 NMEASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSLW 304 N E +++ TYVY AGL Q+S+STAVG F S+V +I+++ N +AK+ E ++ Sbjct: 270 NREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIVGLIMVMLANWLAKKFGEEGVY 325 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 230 bits (587), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 123/293 (41%), Positives = 176/293 (60%), Gaps = 2/293 (0%) Query: 13 QNWELYLFMAPALLYFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFERFFNSYFF 72 Q LYL P + + L+F+Y P++G +AF+NF P WVG HF F F Sbjct: 26 QQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSFFEQEWVGLQHFIELFQDNRF 85 Query: 73 WDLLWNTFSISFYELAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISVVVMAGMI 132 + +L NT ++S L VGF +PI+ A+ NEVR+ FK++VQTV+Y PHF+S VV+AG++ Sbjct: 86 YLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRTVQTVSYLPHFVSWVVVAGIV 145 Query: 133 ITFLSPSSGMIVRVIEFLGF--QPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYLAALSG 190 LS G++ +++ GF QP +F+ WF + S +W+ GW +II+LAA++G Sbjct: 146 TKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTLSDLWKEMGWNSIIFLAAMAG 205 Query: 191 VDPQLHEAAIVDGASRLKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQNSLNM 250 +DPQL+EAA VDGASR +++ HI LP I PTI FEK LL N L + Sbjct: 206 IDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSIGHLMAIGFEKQFLLGNPLVV 265 Query: 251 EASDVISTYVYRAGLVNAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSL 303 + S+V+ Y GL +YS+ TA+G+FNSVV +ILL N I KR + S+ Sbjct: 266 DYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFLANGIFKRFTNQSV 318 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 226 bits (575), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 121/277 (43%), Positives = 170/277 (61%) Query: 27 YFLIFHYGPMYGIQIAFKNFVPSKGITGSSWVGFDHFERFFNSYFFWDLLWNTFSISFYE 86 YFLIF Y PM+G+ IAFK++ P G S WVGFD+F+ FF + F+ LL NT ++ + Sbjct: 41 YFLIFKYLPMWGVLIAFKDYSPYLGFWKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLD 100 Query: 87 LAVGFPLPIILALAFNEVRNGPFKKSVQTVTYAPHFISVVVMAGMIITFLSPSSGMIVRV 146 L FP P+ILAL NEVR +K+ +QT Y PHF+S ++ + F + +G+I ++ Sbjct: 101 LLFAFPAPLILALLLNEVRKAVYKRCIQTFIYVPHFVSWTIVVSITFVFFTVDTGVINKL 160 Query: 147 IEFLGFQPAEFLTDPAWFKTVYVFSGVWQSTGWGTIIYLAALSGVDPQLHEAAIVDGASR 206 I L + FL+D WF+ + V +W+ TGWGTI++LAAL+ VD + +EAAI+DGA R Sbjct: 161 IMSLTGEQISFLSDADWFRPMIVMQSIWKETGWGTILFLAALATVDQEQYEAAIMDGAGR 220 Query: 207 LKRVLHINLPTIVPTITXXXXXXXXXXXXXXFEKILLLQNSLNMEASDVISTYVYRAGLV 266 +R+ HI LP I TI FE++ L+ NSLN +D+ TYVY G+ Sbjct: 221 FRRMWHITLPAIRSTIIVLLILRIGSFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGIT 280 Query: 267 NAQYSFSTAVGLFNSVVNVILLVTVNRIAKRTSENSL 303 YS+STAVGLF SVV +IL+ N IAK+ + L Sbjct: 281 QGAYSYSTAVGLFKSVVGIILIFGANYIAKKFDQEGL 317 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.327 0.140 0.439 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 20,952,113 Number of extensions: 792323 Number of successful extensions: 2241 Number of sequences better than 1.0e-05: 138 Number of HSP's gapped: 2128 Number of HSP's successfully gapped: 138 Length of query: 304 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 198 Effective length of database: 26,153,027 Effective search space: 5178299346 Effective search space used: 5178299346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)