BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0017.p (230 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SA1939 [F] COG0274 Deoxyribose-phosphate aldolase 240 2e-63 SA0133 [F] COG0274 Deoxyribose-phosphate aldolase 239 2e-63 YPO1323 [F] COG0274 Deoxyribose-phosphate aldolase 206 2e-53 aq_1480 [I] COG0558 Phosphatidylglycerophosphate synthase 146 3e-35 aq_1484a [L] COG0776 Bacterial nucleoid DNA-binding protein 146 3e-35 >SA1939 [F] COG0274 Deoxyribose-phosphate aldolase Length = 220 Score = 240 bits (612), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/217 (61%), Positives = 159/217 (73%), Gaps = 2/217 (0%) Query: 14 IIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFP 73 +IDHTLLK ++ + I ++ +EAK Y F SVCVNP V A E L D+ EV VCTVIGFP Sbjct: 6 LIDHTLLKPESTRTQIDQIIDEAKAYHFKSVCVNPTHVKYAAERLADS-EVLVCTVIGFP 64 Query: 74 LGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKV 133 LGAST TKAFET +AI NGA E+DMVINIGALKDG + V++DI AVV AA+G + KV Sbjct: 65 LGASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTV-KV 123 Query: 134 IIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASG 193 IIET LL +E V+A +L AGADFVKTSTGF+ GGAT ED+ LM+ VG D+ VKASG Sbjct: 124 IIETVLLDHDEIVKASELTKVAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVKASG 183 Query: 194 GVRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 GVR+ ED MV AGATRIG S GV I +G ++ S Y Sbjct: 184 GVRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY 220 >SA0133 [F] COG0274 Deoxyribose-phosphate aldolase Length = 220 Score = 239 bits (611), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 133/216 (61%), Positives = 158/216 (73%), Gaps = 2/216 (0%) Query: 15 IDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFPL 74 IDHTLLK ++ + I ++ +EAK Y F SVCVNP V A E L D+ EV VCTVIGFPL Sbjct: 7 IDHTLLKPESTRTQIDQIIDEAKAYNFKSVCVNPTHVKYAAERLADS-EVLVCTVIGFPL 65 Query: 75 GASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKVI 134 GAST TKAFET +AI NGA E+DMVINIGALKDG + V++DI AVV AA+G + KVI Sbjct: 66 GASTTATKAFETEDAIQNGADEIDMVINIGALKDGRFDDVQQDIEAVVKAAKGHTV-KVI 124 Query: 135 IETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASGG 194 IET LL +E V+A +L AGADFVKTSTGF+ GGAT ED+ LM+ VG D+ VKASGG Sbjct: 125 IETVLLDHDEIVKASELTKAAGADFVKTSTGFAGGGATAEDVKLMKDTVGADVEVKASGG 184 Query: 195 VRSAEDALIMVGAGATRIGTSGGVAIAKGEQSQSGY 230 VR+ ED MV AGATRIG S GV I +G ++ S Y Sbjct: 185 VRNLEDFNKMVEAGATRIGASAGVQIMQGLEADSDY 220 >YPO1323 [F] COG0274 Deoxyribose-phosphate aldolase Length = 223 Score = 206 bits (525), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/226 (55%), Positives = 150/226 (66%), Gaps = 4/226 (1%) Query: 6 MSTNTLSGIIDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVK 65 M+TN + IDHTLL DA + IIKL EEAK + F +VCVN +V A + L + VK Sbjct: 1 MTTN-YAHYIDHTLLAMDATEAQIIKLCEEAKQHHFYAVCVNSGYVPVAAQQLAGS-SVK 58 Query: 66 VCTVIGFPLGASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAA 125 VC+VIGFPLGA KAFE AI+ GA E+DMVIN+G LK G VK DI AV Sbjct: 59 VCSVIGFPLGAGLTAAKAFEAQAAINAGAQEIDMVINVGWLKSGKIADVKADIKAVRDNC 118 Query: 126 RGKALTKVIIETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGP 185 L KVI+ETCLL+DE+ V+ C++ E FVKTSTGFSTGGA +E + LMRA VGP Sbjct: 119 AATPL-KVILETCLLSDEQIVQVCEMCRELDVAFVKTSTGFSTGGAKEEHVKLMRATVGP 177 Query: 186 DIGVKASGGVRSAEDALIMVGAGATRIGTSGGVAIAKGEQ-SQSGY 230 +GVKASG VR A M+ AGATRIGTS GVAI G+Q + SGY Sbjct: 178 VMGVKASGAVRDRATAETMIQAGATRIGTSSGVAIVSGQQAAASGY 223 >aq_1480 [I] COG0558 Phosphatidylglycerophosphate synthase Length = 219 Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 4/208 (1%) Query: 15 IDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFPL 74 ID+ LK +++I + +++ +VCVNP V A + K +VKVC VIGFPL Sbjct: 8 IDNAALKPHLSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAK---KVKVCCVIGFPL 64 Query: 75 GASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKVI 134 G + K E A+ +GA E+D+V N+ A K + V ++ + A+ KVI Sbjct: 65 GLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPS-AVHKVI 123 Query: 135 IETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASGG 194 +ET L +EE +A ++ +EAGADF+KTSTGF+ G T E++ L++++ I VKASGG Sbjct: 124 VETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGG 183 Query: 195 VRSAEDALIMVGAGATRIGTSGGVAIAK 222 +R E A+ M+ AGA RIGTS G++IA+ Sbjct: 184 IRDLETAISMIEAGADRIGTSSGISIAE 211 >aq_1484a [L] COG0776 Bacterial nucleoid DNA-binding protein Length = 219 Score = 146 bits (368), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/208 (40%), Positives = 126/208 (60%), Gaps = 4/208 (1%) Query: 15 IDHTLLKADARKEDIIKLAEEAKTYTFASVCVNPAWVATAHEVLKDTPEVKVCTVIGFPL 74 ID+ LK +++I + +++ +VCVNP V A + K +VKVC VIGFPL Sbjct: 8 IDNAALKPHLSEKEIEEFVLKSEELGIYAVCVNPYHVKLASSIAK---KVKVCCVIGFPL 64 Query: 75 GASTPETKAFETTNAISNGAGEVDMVINIGALKDGDNELVKRDIAAVVGAARGKALTKVI 134 G + K E A+ +GA E+D+V N+ A K + V ++ + A+ KVI Sbjct: 65 GLNKTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPS-AVHKVI 123 Query: 135 IETCLLTDEEKVRACKLAVEAGADFVKTSTGFSTGGATKEDIALMRAAVGPDIGVKASGG 194 +ET L +EE +A ++ +EAGADF+KTSTGF+ G T E++ L++++ I VKASGG Sbjct: 124 VETPYLNEEEIKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGRIKVKASGG 183 Query: 195 VRSAEDALIMVGAGATRIGTSGGVAIAK 222 +R E A+ M+ AGA RIGTS G++IA+ Sbjct: 184 IRDLETAISMIEAGADRIGTSSGISIAE 211 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.130 0.358 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 16,352,095 Number of extensions: 660170 Number of successful extensions: 2284 Number of sequences better than 1.0e-05: 16 Number of HSP's gapped: 2251 Number of HSP's successfully gapped: 16 Length of query: 230 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 127 Effective length of database: 26,499,029 Effective search space: 3365376683 Effective search space used: 3365376683 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 114 (48.5 bits)