BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0377.0003.p
         (207 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BH0392 [R] COG1853 Conserved protein/domain typically associated...   264   6e-71
BS_ydfE [R] COG1853 Conserved protein/domain typically associate...   250   8e-67
BH3984 [R] COG1853 Conserved protein/domain typically associated...   145   4e-35

>BH0392 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family
          Length = 202

 Score =  264 bits (675), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 124/198 (62%), Positives = 151/198 (76%)

Query: 10  QTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRK 69
           ++ TI+P ILYYGTPVILLTTLNED TVNISPISSS+ LG HI+LG+G GGKA+ENL+R 
Sbjct: 5   KSTTIKPSILYYGTPVILLTTLNEDGTVNISPISSSFVLGNHIVLGIGVGGKAMENLERH 64

Query: 70  PECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTA 129
            ECVINLP   LWE VE LA  TGK PVP EK+  GF FEKDK+  +GLT  +S  VQ  
Sbjct: 65  AECVINLPSPELWEHVERLAPYTGKQPVPREKEALGFTFEKDKYGRSGLTPVKSLSVQPD 124

Query: 130 RIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYNF 189
           RIAECP+Q+EA+V  +++P  + +FAIVET+ + VH H  +V    +IDP  W+PLIYNF
Sbjct: 125 RIAECPLQMEAKVIDVKVPAHSPYFAIVETEVLHVHAHDSIVIDNRYIDPVRWSPLIYNF 184

Query: 190 RHYFGLSPELGKSYRSET 207
           RHYF L  ELGK++RSET
Sbjct: 185 RHYFSLGKELGKTFRSET 202


>BS_ydfE [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family
          Length = 306

 Score =  250 bits (639), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 8/199 (4%), Positives = 30/199 (15%)

Query: 9   RQTVTIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQR 68
                +  +          +   +E                              +    
Sbjct: 9   AIPDELATREEGAVAVATAIEAGDERRARAKFHWQFLEHYPAAQDCAYKFIVCEDKPGIP 68

Query: 69  KPECVINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQT 128
           +P       +     + +  +         ++     F     +   A + K ++    T
Sbjct: 69  RPALDSWDAEYMQENRWDEESASFVPVETESDPMNVTFDKLAPEVQNAVMVKFDTCENIT 128

Query: 129 ARIAECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVAGEHHIDPASWNPLIYN 188
             +     ++                  +   +      K    G               
Sbjct: 129 VDMVISAQELLQEDMATFDGHIVEALMKMPEVNAMYPELKLHAIGWVKHKCIPGAKWPEI 188

Query: 189 FRHYFGLSPELGKSYRSET 207
                          +   
Sbjct: 189 QAEMRIWKKRREGERKETG 207


>BH3984 [R] COG1853 Conserved protein/domain typically associated with
           flavoprotein oxygenases, DIM6/NTAB family
          Length = 208

 Score =  145 bits (366), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 71/192 (36%), Positives = 115/192 (59%), Gaps = 2/192 (1%)

Query: 13  TIQPKILYYGTPVILLTTLNEDLTVNISPISSSWALGEHIILGLGTGGKALENLQRKPEC 72
           TI  KI Y+GTPV+L++TLNE+ T N++P+SS+W L    +LG+    + + NL R+ EC
Sbjct: 4   TINSKIFYFGTPVVLISTLNENGTPNLAPMSSAWWLNHSCMLGMSGNSQTVTNLIREREC 63

Query: 73  VINLPDASLWEQVEGLARLTGKNPVPAEKKEAGFIFEKDKFAYAGLTKAESTRVQTARIA 132
           V+NLP A+L   V+ LA  TGK  +P  K   G+ +  DKF  + LT   +  V+   + 
Sbjct: 64  VLNLPSAALVSAVDKLALTTGKKRIPDYKLNMGYEYVADKFGRSNLTAKPAQLVKAPVVH 123

Query: 133 ECPIQIEARVNHIRIPEDAAHFAIVETQSVQVHVHKELVA--GEHHIDPASWNPLIYNFR 190
           ECP+Q+EA V +I   ++ +    +E + ++ H+ + ++    +++IDP  W PLI +F 
Sbjct: 124 ECPVQLEAIVKNIHSFDEPSFLKAIEVEIIKTHIDESILVEDNQNYIDPEKWKPLIMSFC 183

Query: 191 HYFGLSPELGKS 202
            +F L  +L  S
Sbjct: 184 EFFSLGDKLHHS 195


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.135    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 16,487,609
Number of extensions: 725291
Number of successful extensions: 1327
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 1329
Number of HSP's successfully gapped: 3
Length of query: 207
Length of database: 38,378,431
Length adjustment: 102
Effective length of query: 105
Effective length of database: 26,614,363
Effective search space: 2794508115
Effective search space used: 2794508115
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 113 (48.1 bits)