BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0377.0002.p (232 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0391 [K] COG0640 Predicted transcriptional regulators 213 1e-55 BS_ydfF [K] COG0640 Predicted transcriptional regulators 198 6e-51 AGc2461 [K] COG0640 Predicted transcriptional regulators 170 1e-42 SMc00080 [K] COG0640 Predicted transcriptional regulators 165 5e-41 PA0279 [K] COG0640 Predicted transcriptional regulators 160 2e-39 >BH0391 [K] COG0640 Predicted transcriptional regulators Length = 234 Score = 213 bits (543), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 104/223 (46%), Positives = 141/223 (63%), Gaps = 4/223 (1%) Query: 10 VASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGILTVHTQGRH 69 VASL+++ SR +++T L+ G H A+ LA AA I PQTASFHL KM E ++ V QGRH Sbjct: 9 VASLVSDDSRGAMMTVLLDGRFHTATELALAANITPQTASFHLTKMVEAHLVAVEKQGRH 68 Query: 70 RYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGKFGVQLTEAL 129 RYYGI ++A V+E LL+I+PP ++ S + +D A+R ARTCYDHLAG GVQL E+L Sbjct: 69 RYYGIVDSDVANVLESLLAIAPPKEIHSFNQATEDHALRFARTCYDHLAGHVGVQLMESL 128 Query: 130 RLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERRHHXXXXXXX 189 I E NGFS+T +GE ++L++++K RR+F+ KCLDWSERR H Sbjct: 129 LQNQFIFETENGFSITDKGERFFSDFQVNLEELRKKRRSFSHKCLDWSERRPHLAGALGH 188 Query: 190 XXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLTFSVPV 232 W+ RLP++RA+ IT G+ G F TFS+ V Sbjct: 189 ALLERFYQLHWIERLPRSRALTITPLGKTG----FRETFSMDV 227 >BS_ydfF [K] COG0640 Predicted transcriptional regulators Length = 226 Score = 198 bits (504), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 98/214 (45%), Positives = 140/214 (65%) Query: 4 NPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGILTV 63 NP +A+++SL+++PSR+SIL +LM G +HPA LA A IKPQTASFHL K+ E +++V Sbjct: 2 NPNIAKISSLLSDPSRSSILLSLMDGRIHPAGELAYLANIKPQTASFHLNKLLEAKLISV 61 Query: 64 HTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGKFGV 123 GRHRYY ++ + A VIE LL I+P KV SL+ S + + + ARTCYDHLAG GV Sbjct: 62 EKHGRHRYYRLADSDAANVIEQLLHIAPKAKVKSLKESKEKKDLHFARTCYDHLAGYVGV 121 Query: 124 QLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERRHHX 183 Q+ +L +G++ + F VT++G +LGI+ +Q + RRAFA CLDWSER+HH Sbjct: 122 QMAHSLVEQGMLKKVDLNFEVTSEGALFFSKLGINEEQQRNKRRAFARCCLDWSERQHHI 181 Query: 184 XXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQ 217 + +W+ R+P+TRA+ IT G+ Sbjct: 182 AGALGNALLVRMLEEEWIVRMPKTRAIRITQSGK 215 >AGc2461 [K] COG0640 Predicted transcriptional regulators Length = 218 Score = 170 bits (431), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 0/227 (0%), Positives = 0/227 (0%), Gaps = 2/227 (0%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 + A+ + ++ + S + A + A + K Sbjct: 25 ILASSSASRQMLMRNAGLTFSAIPADIDERALDEQLERDGASPEEVALELARAKALAVSA 84 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 L ++ ++ + +S + + + Sbjct: 85 LHPEALVLGCDQTMALGTRVYHKPKNMAEAATHLLSLSGKVHRLNSAAVLVHNGKVVWQT 144 Query: 121 FGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSERR 180 L + V + ++ ++ + ++ Sbjct: 145 VSSAELAVRTLSAEFV-SRHLQRVGEKALSSVGAYQLEREGIQLFTSIEGDYFTILGLPL 203 Query: 181 HHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFPLT 227 Sbjct: 204 - 249 >SMc00080 [K] COG0640 Predicted transcriptional regulators Length = 227 Score = 165 bits (418), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/226 (39%), Positives = 126/226 (55%), Gaps = 1/226 (0%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 M+ P +A + SLI +P+RA++LTALMGG + LA+ AGI QTAS HL K+ GG+ Sbjct: 1 MKEGPDIALIGSLIGDPARANMLTALMGGQALTPTELAAQAGITLQTASSHLAKLEAGGL 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSVQDQAMRHARTCYDHLAGK 120 LT QGRHRYY +S E+ ++E L+ + ++ R +D A+R AR CY+HLAG Sbjct: 61 LTQRKQGRHRYYALSEDEVGLMLESLMGFAAGRGLTRSRPGPKDPALRKARVCYNHLAGD 120 Query: 121 FGVQLTEAL-RLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLDWSER 179 +GV++ ++L I + ++T G ++ LGID ++K RR CLDWSER Sbjct: 121 YGVRMLDSLIGARQIETAGEDDLALTDAGRVRIESLGIDYAALRKSRRPICRTCLDWSER 180 Query: 180 RHHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGLAAAFP 225 R H D+ W R +RAV TA G+K FP Sbjct: 181 RSHLAGSLGEALLTLFIDKGWAKREQNSRAVRFTAPGEKAFLELFP 226 >PA0279 [K] COG0640 Predicted transcriptional regulators Length = 232 Score = 160 bits (404), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 86/225 (38%), Positives = 129/225 (57%), Gaps = 7/225 (3%) Query: 1 MQANPAVAQVASLITEPSRASILTALMGGGLHPASALASAAGIKPQTASFHLGKMAEGGI 60 MQ NP + +A+L+ +P RA ++ ALM G PAS LA AG+ P +AS HLG++ EGG+ Sbjct: 1 MQFNPGFSSLAALLADPGRAQMIWALMDGSARPASELALLAGVSPSSASGHLGRLVEGGV 60 Query: 61 LTVHTQGRHRYYGISSPEIAQVIELLLSISPPVKVSSLRHSV-----QDQAMRHARTCYD 115 L++ +GR+R+Y ++ PE+ Q +E L S S + + R S+ A+R ARTCYD Sbjct: 61 LSLEARGRNRFYRLAGPEVGQAVEALASAS--LALQPQRRSLPPSHGTPSALREARTCYD 118 Query: 116 HLAGKFGVQLTEALRLEGIIAEEANGFSVTAQGEHALKRLGIDLDQVKKCRRAFAPKCLD 175 HLAG+ V + + G I +E ++A GE L LGIDL +V++ RR FA C D Sbjct: 119 HLAGELAVGVFARMLDAGWIEQEGRTLRLSATGEAGLAGLGIDLAEVRRRRRQFACACPD 178 Query: 176 WSERRHHXXXXXXXXXXXXXXDRQWVNRLPQTRAVVITADGQKGL 220 WSER+ H + W+ +RA+ +++ G+ GL Sbjct: 179 WSERKPHLGGALGAALLEACLRQGWLRPQDGSRALQVSSKGRAGL 223 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.320 0.132 0.388 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 15,383,815 Number of extensions: 549193 Number of successful extensions: 1302 Number of sequences better than 1.0e-05: 8 Number of HSP's gapped: 1301 Number of HSP's successfully gapped: 8 Length of query: 232 Length of database: 38,378,431 Length adjustment: 103 Effective length of query: 129 Effective length of database: 26,499,029 Effective search space: 3418374741 Effective search space used: 3418374741 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 114 (48.5 bits)