BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0010.p (261 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1874 [G] COG3534 Alpha-L-arabinofuranosidase 315 3e-86 BS_xsa [G] COG3534 Alpha-L-arabinofuranosidase 315 6e-86 BH1861 [G] COG3534 Alpha-L-arabinofuranosidase 60 5e-09 BS_abfA [G] COG3534 Alpha-L-arabinofuranosidase 59 7e-09 >BH1874 [G] COG3534 Alpha-L-arabinofuranosidase Length = 498 Score = 315 bits (808), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 151/265 (56%), Positives = 198/265 (74%), Gaps = 5/265 (1%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 MDGLSLH YT+PG WE K AL EWF+T+KKS MDEL+T+HS IMD+YDPE+RV Sbjct: 232 MDGLSLHYYTVPGDFWENKGSALDDRESEWFKTLKKSFRMDELLTKHSTIMDRYDPEKRV 291 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 GLI+DEWGTWF EPGTNPGFLYQQNT+RDALVAG+H +IF H+ RV MANIAQMVNVL Sbjct: 292 GLIVDEWGTWFDVEPGTNPGFLYQQNTIRDALVAGVHFHIFHEHNDRVHMANIAQMVNVL 351 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 QA++LTEG+++LLTPTYHVF+MYKVHQD LEV + Y G + +P ++VSAS+D Sbjct: 352 QAMVLTEGEQMLLTPTYHVFNMYKVHQDATRLEVNADVGTYKFGDDELPAVTVSASKDNE 411 Query: 180 GRVYISLCNLSHEDSAGLRIELAG----TSAGTVAGQILTHSDLNAHNTFEAPATVAPAI 235 G +++S+C+L L ++L G SA +V+G++LT ++LNAHNTFE P V P Sbjct: 412 GAIHVSVCHLDPHRDTDLTLKLNGLNKSLSASSVSGELLTANELNAHNTFERPNEVEPVP 471 Query: 236 FEGASLKNGVLDCQLPPASVVVLTL 260 +E AS+ ++ ++P +SV+ +T+ Sbjct: 472 YEPASVSGHEMELKVPASSVLRVTI 496 >BS_xsa [G] COG3534 Alpha-L-arabinofuranosidase Length = 148 Score = 315 bits (806), Expect = 6e-86, Method: Compositional matrix adjust. Identities = 0/262 (0%), Positives = 0/262 (0%), Gaps = 2/262 (0%) Query: 1 MDGLSLHSYTIPGS-WEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQRV 59 Sbjct: 230 289 Query: 60 GLIIDEWGTWFLSEPGTNPGFLYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVL 119 Sbjct: 290 349 Query: 120 QALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVYSMGRESIPQLSVSASRDEA 179 Sbjct: 350 409 Query: 180 GRVYISLCNLSHEDSAGLRIELAGT-SAGTVAGQILTHSDLNAHNTFEAPATVAPAIFEG 238 Sbjct: 410 469 Query: 239 ASLKNGVLDCQLPPASVVVLTL 260 Sbjct: 470 491 >BH1861 [G] COG3534 Alpha-L-arabinofuranosidase Length = 500 Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 68/275 (24%), Positives = 109/275 (39%), Gaps = 29/275 (10%) Query: 1 MDGLSLHSYTIPGSWEEKRFALGFDNGEWFETMKKSLYMDELITRHSNIMDKYDPEQR-- 58 +D +SLH+Y G + + + +S+ MDE I I D ++R Sbjct: 237 VDYISLHTY------------YGNRDDDLANYLAQSMDMDEFIRSVIAIADYVKAKKRSK 284 Query: 59 --VGLIIDEWGTWFLSEPGTN--------PGFLYQQNTLRDALVAGIHLNIFQNHSKRVQ 108 + L DEW WF S P L T DAL+ G L H+ RV+ Sbjct: 285 KTIHLSFDEWNVWFHSNEADRQITPWSVAPPLLEDIYTFEDALLVGSMLITLLKHADRVK 344 Query: 109 MANIAQMVNVLQALILTEGDKLLLTPTYHVFDMYKVHQDNELLEVVMESPVY-SMGRESI 167 +A +AQ+VNV+ ++ +G ++ + V+ L+ + SP Y S + Sbjct: 345 IACLAQLVNVIAPIMTEKGGPAWKQTIFYPYMHASVYGRGVALQAQISSPKYDSKDFTDV 404 Query: 168 PQLSVSASR-DEAGRVYISLCNLSHEDSAGLRIELAGTSAGTVAGQI-LTHSDLNAHNTF 225 P L + +EA V I N +S L+ ++ V I L H ++ A N Sbjct: 405 PYLDAAVVHLEEAEEVTIFAVNKHQTESLNLQCDMRSFEGYHVLEHIVLEHENMKATN-- 462 Query: 226 EAPATVAPAIFEGASLKNGVLDCQLPPASVVVLTL 260 + V P +++ G L L S V+ L Sbjct: 463 QGREQVTPHHNGDSAIDQGRLTANLAKLSWNVIRL 497 >BS_abfA [G] COG3534 Alpha-L-arabinofuranosidase Length = 500 Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 97/243 (39%), Gaps = 15/243 (6%) Query: 33 MKKSLYMDELITRHSNIMD----KYDPEQRVGLIIDEWGTWFLS-------EPG-TNPGF 80 + +S+ +D I + D K ++ + L +DEW W+ S EP T Sbjct: 256 LARSMDLDHFIKSVAATCDYVKAKTRSKKTINLSLDEWNVWYHSNEADKKVEPWITARPI 315 Query: 81 LYQQNTLRDALVAGIHLNIFQNHSKRVQMANIAQMVNVLQALILTEGDKLLLTPTYHVFD 140 L DAL+ G L H+ RV++A +AQ+VNV+ ++ +G + P ++ + Sbjct: 316 LEDIYNFEDALLVGSLLITMLQHADRVKIACLAQLVNVIAPIMTEKGGEAWRQPIFYPYM 375 Query: 141 MYKVHQDNELLEVVMESPVYSMGR-ESIPQLSVSASRDEAGRVYISLCNLSHEDSAGLRI 199 V+ E L+ ++ SP Y +P + + E ED I Sbjct: 376 HASVYGRGESLKPLISSPKYDCSDFTDVPYVDAAVVYSEEEETLTIFAVNKAEDQMETEI 435 Query: 200 ELAGTSAGTVAGQI-LTHSDLNAHNTFEAPATVAPAIFEGASLKNGVLDCQLPPASVVVL 258 L G + +A I L H D+ A N V P +S+ L P S V+ Sbjct: 436 SLRGFESYQIAEHIVLEHQDIKATNQHNR-KNVVPHSNGSSSVSENGLTAHFTPLSWNVI 494 Query: 259 TLE 261 L+ Sbjct: 495 RLK 497 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.318 0.134 0.394 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,246,716 Number of extensions: 741300 Number of successful extensions: 5633 Number of sequences better than 1.0e-05: 4 Number of HSP's gapped: 5627 Number of HSP's successfully gapped: 4 Length of query: 261 Length of database: 38,378,431 Length adjustment: 104 Effective length of query: 157 Effective length of database: 26,383,695 Effective search space: 4142240115 Effective search space used: 4142240115 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 115 (48.9 bits)