BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0008.p (304 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value lin0761 [G] COG0395 ABC-type sugar transport system, permease co... 181 1e-45 lin0219 [G] COG0395 ABC-type sugar transport system, permease co... 167 2e-41 all0261 [G] COG0395 ABC-type sugar transport system, permease co... 151 1e-36 YPO2475 [G] COG0395 ABC-type sugar transport system, permease co... 150 2e-36 STM1853 [T] COG0639 Diadenosine tetraphosphatase and related ser... 149 5e-36 >lin0761 [G] COG0395 ABC-type sugar transport system, permease component Length = 291 Score = 181 bits (460), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 95/283 (33%), Positives = 155/283 (54%), Gaps = 19/283 (6%) Query: 33 YISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENTSTAP 92 +I Y+ ++++ ++ + P+++ ++TSF+ SE++S+ L PK + +DNY + ST P Sbjct: 13 FIWYIAVLLISLVTVFPLIWTVSTSFKPTSEILSNSMNLIPKMFTWDNYKDVF---STTP 69 Query: 93 ILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPS 152 R+L+NSL +A L + S+ GY ++++ FKG+ LF T LG P VV +IPS Sbjct: 70 FARYLVNSLILAVGGVLTNLFFGSLAGYAFAKLPFKGKKGLFMTFLGSMMIPAVVTMIPS 129 Query: 153 YKIID--------------ALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAH 198 + ++ +G++NT WA++IPG AG +IF ++QF +P +L E+A Sbjct: 130 FLVLKNFPLMGGNDITGHGGMGFINTYWAILIPGAAGAFSIFFMKQFFETLPDELSEAAR 189 Query: 199 VDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQ 258 +DG F+I++ + +F WN F+WP+IV M V GL Q Sbjct: 190 IDGCSEFKIFWKIYMPLAKTALATLGIMTFQAGWNQFMWPLIVLNSQKMMTVQVGLASFQ 249 Query: 259 DIYGNYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 Y G LM +++ IP L +F+FAQKYFV+ I N G Sbjct: 250 --YNESANYGALMAGTIVSTIPVLFVFIFAQKYFVEGIAHNGG 290 >lin0219 [G] COG0395 ABC-type sugar transport system, permease component Length = 282 Score = 167 bits (422), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 100/286 (34%), Positives = 161/286 (56%), Gaps = 9/286 (3%) Query: 20 TVKSKSPGISISKYI-SYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIF 78 T KS SP + K I +Y + + II ++P V+ I+T+F++ + + + PKE Sbjct: 3 TEKSGSPKWQLIKNILTYTIICLGGIIMLMPFVWMISTAFKTGAANMVLPPQFIPKEPTT 62 Query: 79 DNYVAILENTSTAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLL 138 N+ + E P+LR+LMNS+ +A + TL ++ S+ Y ++R+ F GRD LF L Sbjct: 63 ANFTQVFE---MFPMLRFLMNSVVVAVVTTLGQMLFCSMAAYAFARIPFWGRDKLFLLYL 119 Query: 139 GISFFPGVVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAH 198 P V +IP + ++ GW+++ +I+P L + FL+RQ GIPK+L+E+A Sbjct: 120 ATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGTFLLRQAFMGIPKELEEAAF 179 Query: 199 VDGAGHFRIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQ 258 +DGA HF I+ + +F SWN +LWP+IV + + + GL LLQ Sbjct: 180 MDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLWPLIVTSSQEMATLPLGLSLLQ 239 Query: 259 DIYG-NYRMIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSGIK 303 YG NY G +M ++++IP L ++LFAQKYF+Q + + SG+K Sbjct: 240 GRYGTNY---GLMMAGVLISVIPILAVYLFAQKYFIQGMAM-SGMK 281 >all0261 [G] COG0395 ABC-type sugar transport system, permease component Length = 276 Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/275 (30%), Positives = 146/275 (53%), Gaps = 4/275 (1%) Query: 27 GISISKYISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILE 86 + ++K + Y+ L +I ++P ++ ++ SF+ SE+VS P+ + DNY I Sbjct: 4 SLPLAKVLLYVLLTTYAVITLVPFLWALSASFKPLSEIVSGTPNFLPQNFTLDNYRQIFL 63 Query: 87 NTSTAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGV 146 LRWL NS+ IA TLL ++ S+ GY +R+ F G++ FF +L + P Sbjct: 64 QEPL--FLRWLFNSVVIAVSVTLLNLLFNSMAGYALARLSFVGKNFWFFLILAVLAVPAQ 121 Query: 147 VNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAHVDGAGHFR 206 + LIP++ I+ A+GW+N+ MI+P + IF++RQF P++L+E+A +DG Sbjct: 122 ITLIPTFLILKAIGWLNSYQGMIVPSMVNATFIFMMRQFFINFPQELEEAAQLDGLNTIG 181 Query: 207 IYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQDIYGNYRM 266 I+ A+F F GSWN+FL PV++ + + + GL + Y +Y Sbjct: 182 IFRYIILPLAKPALAAQAVFVFMGSWNNFLLPVVILFEPEMFTLPLGLNTFKGQYISYW- 240 Query: 267 IGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLNSG 301 +M ++++ +P L ++ F +YF+QS G Sbjct: 241 -NYIMAASMVFTLPALSIYAFFNRYFIQSATFTGG 274 >YPO2475 [G] COG0395 ABC-type sugar transport system, permease component Length = 274 Score = 150 bits (380), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 90/274 (32%), Positives = 154/274 (56%), Gaps = 8/274 (2%) Query: 29 SISKYISYLFLIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAILENT 88 +I+ I +L + L + W+ P ++ + +SF+ +++ ++G LF + DNY + EN+ Sbjct: 4 NINSLIIHLVMFSLALSWLYPYIWMVLSSFKQSADIYTTG--LFGSAYSLDNYRFLFENS 61 Query: 89 S--TAPILRWLMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISF-FPG 145 P L+ L NSLFI+++ T+ V + G+ ++M+FKG+ +LF LL + FP Sbjct: 62 GRVEKPFLKTLFNSLFISTVVTVAVTLSSMFIGFALAKMQFKGQ-SLFRNLLFLQMVFPA 120 Query: 146 VVNLIPSYKIIDALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAHVDGAGHF 205 + +IP + ++ LG +NT AMI+P L IF++ Q G P D +A +D A + Sbjct: 121 SMFIIPQFVLVRELGLLNTYSAMIVPFLMSSWGIFMISQSFQGTPNDYIHAAKIDNASLW 180 Query: 206 RIYFSXXXXXXXXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQDIYGNYR 265 +I ALF+F G+W++FLWP+IV D KMP++ L YG Y Sbjct: 181 QIMIYLMMPLNKAIIAIVALFTFVGTWDNFLWPLIVIQDESKMPLSVLLATFSKSYGVY- 239 Query: 266 MIGQLMGSAVLAIIPTLLLFLFAQKYFVQSINLN 299 +G ++ AV+ IP ++LF+ +KYF+Q ++L+ Sbjct: 240 -VGPVIAGAVIQTIPIVVLFILFRKYFMQGMSLS 272 >STM1853 [T] COG0639 Diadenosine tetraphosphatase and related serine/threonine protein phosphatases Length = 346 Score = 149 bits (376), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 14/263 (5%), Positives = 42/263 (15%), Gaps = 7/263 (2%) Query: 39 LIVLCIIWIIPVVFGITTSFRSQSEVVSSGFRLFPKEWIFDNYVAI--LENTSTAPILRW 96 + + V+ + + + Y E Sbjct: 14 STLGLGTMTFGEQNSEADAHAQLDYAVA---QGINLIDVAEMYPVPPRPETQGLTETYVG 70 Query: 97 LMNSLFIASMHTLLVVVVISITGYGYSRMKFKGRDTLFFTLLGISFFPGVVNLIPSYKII 156 + + ++ V + ++ + + Sbjct: 71 NWLAKHGSREKLIIASKVSGPSRNNDKGIRPDQALDRKNIREALHDSLKRLQTDYLDLYQ 130 Query: 157 DALGWVNTSWAMIIPGLAGMGNIFLVRQFMNGIPKDLDESAHVDGAGHFRIYFSXXXXXX 216 T+ + + + + + G Sbjct: 131 VHWPQRPTNCFGKLGYSWTDSAPAVSLLDTLDALAEYQRAGKIRYIGVSNETAFGVMRYL 190 Query: 217 XXXXXXCALFSFTGSWNDFLWPVIVFTDVDKMPVTAGLLLLQDIYGNYRMIGQLMGSAVL 276 T L + ++ G+ LL + Sbjct: 191 HLADKHDLPRIVTIQNPYSLLNRSFEVGLAEVSQYEGVELLAYSCLGF--GTLTGKYLNG 248 Query: 277 AIIPTLLLFLFAQKYFVQSINLN 299 A LF++ Sbjct: 249 AKPAGARNTLFSRFTRYSGEQTQ 271 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.143 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 21,366,135 Number of extensions: 845295 Number of successful extensions: 2460 Number of sequences better than 1.0e-05: 144 Number of HSP's gapped: 2159 Number of HSP's successfully gapped: 144 Length of query: 304 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 198 Effective length of database: 26,153,027 Effective search space: 5178299346 Effective search space used: 5178299346 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 115 (48.9 bits)