BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0007.p (309 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH1865 [G] COG1175 ABC-type sugar transport systems, permease co... 128 1e-29 lin0760 [G] COG1175 ABC-type sugar transport systems, permease c... 124 2e-28 Rv2040c [G] COG1175 ABC-type sugar transport systems, permease c... 119 8e-27 MT2100 [G] COG1175 ABC-type sugar transport systems, permease co... 119 8e-27 ML1426 [G] COG1175 ABC-type sugar transport systems, permease co... 106 4e-23 >BH1865 [G] COG1175 ABC-type sugar transport systems, permease components Length = 309 Score = 128 bits (322), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/266 (32%), Positives = 130/266 (48%), Gaps = 13/266 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ P +I FA+F L P Y IY SFT ++L NEPVW G DNY + T FN Sbjct: 33 FIAPPIIGFAIFALGPMLYSIYVSFTDFDLYNEPVWTGADNYYRLFVTDDLFRKTVFNT- 91 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 F ++KVKG +L ++ ++P + S+ A L+W +F Sbjct: 92 ------FYAALGIPIGMAVSLGIAVALNQKVKGIALFRTAFFLPAVSSVVAITLLWRWIF 145 Query: 149 NKQLGMAG---NVFG-SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ N G W +++ +A NMI+Y A++ GV+ LY Sbjct: 146 NADFGLLNIMLNYVGIHGPGWLSDEKWAMPAMIIQGVWGGLGINMILYLAALQGVNPALY 205 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLM 264 E+A++DG ++F IT+PSI + + +T GA F + ++MT+GGP ST ++ Sbjct: 206 EAADIDGGNAWQKFIHITVPSISPTTFFILITSTIGALQDFQRFMIMTEGGPNYSTTTVV 265 Query: 265 MYIRQLAFGNGESIAGMASAMAVLLG 290 Y+ AF E G ASAMA +LG Sbjct: 266 YYLFLNAFRYME--MGYASAMAWVLG 289 >lin0760 [G] COG1175 ABC-type sugar transport systems, permease components Length = 296 Score = 124 bits (311), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 86/276 (31%), Positives = 129/276 (46%), Gaps = 13/276 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ V+L A+F++LP ++ SFT ++++N P W+G DNY + D F Sbjct: 20 FIALPVLLLAIFMILPIGMALFVSFTDYDIVNSPNWIGFDNYIKMFRDP------YFLIS 73 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 LKNT I+ K KG L ++ YVP L S A A IW L Sbjct: 74 LKNTIIYTALFVPLGLVASLGAAILINMNK-KGAGLFRTFFYVPVLCSTVATATIWYWLL 132 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N Q G+ V G + +W + +A NM+I+ A + G+ +LY Sbjct: 133 NPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQGIPANLY 192 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMTDGGPRQSTHVLM 264 E+++++GA + F +T PS+ M AF VF Q ++T GGP ST L+ Sbjct: 193 EASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGPGNSTITLV 252 Query: 265 MYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQ 300 YI FG + G ASA++ +L L+ILV S + Sbjct: 253 YYIYNEGFGGLK--MGYASAISFVLFLIILVFSIIN 286 >Rv2040c [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 FV P++ VF+L P + +Y SF KW+L +V LDN++ LF S F Sbjct: 15 FVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRN-LFTSDPLFLI----A 69 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 + NT ++ ++K+KG SL ++++++P IS A++W +F Sbjct: 70 VVNTAVYTVGTVVPTVIVSLVVAAFL-NRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF 128 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ + G + W +A ++ A++ GV + +Y Sbjct: 129 NTDNGLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVY 188 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMT--DGGPRQSTHV 262 E+A +DGAG IR+F SIT+P IR L + V++ AF F ++T +GGP +T+V Sbjct: 189 EAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYV 248 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRNA 308 L + + Q AF E G ASA+A ++ ++LV++ LQ + +R + Sbjct: 249 LGIMLFQHAFSFLEF--GYASALAWVMFAILLVLTVLQLRITHRRS 292 >MT2100 [G] COG1175 ABC-type sugar transport systems, permease components Length = 300 Score = 119 bits (297), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 142/286 (49%), Gaps = 14/286 (4%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 FV P++ VF+L P + +Y SF KW+L +V LDN++ LF S F Sbjct: 15 FVAPNLAAVVVFMLFPLGFSLYMSFQKWDLFTHATFVRLDNFRN-LFTSDPLFLI----A 69 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 + NT ++ ++K+KG SL ++++++P IS A++W +F Sbjct: 70 VVNTAVYTVGTVVPTVIVSLVVAAFL-NRKIKGISLFRTVVFLPLAISSVVMAVVWQFVF 128 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ + G + W +A ++ A++ GV + +Y Sbjct: 129 NTDNGLLNIMLGWLGIGPIPWLIEPRWAMVSLCLVSVWRSVPFATVVLLAAMQGVPETVY 188 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMT--DGGPRQSTHV 262 E+A +DGAG IR+F SIT+P IR L + V++ AF F ++T +GGP +T+V Sbjct: 189 EAARIDGAGEIRQFVSITVPLIRGALSFVVVISIIHAFQAFDLVYVLTGANGGPETATYV 248 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVLLGLVILVISALQYYVMNRNA 308 L + + Q AF E G ASA+A ++ ++LV++ LQ + +R + Sbjct: 249 LGIMLFQHAFSFLEF--GYASALAWVMFAILLVLTVLQLRITHRRS 292 >ML1426 [G] COG1175 ABC-type sugar transport systems, permease components Length = 319 Score = 106 bits (265), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 78/266 (29%), Positives = 132/266 (49%), Gaps = 14/266 (5%) Query: 29 FVGPHVILFAVFILLPTFYGIYASFTKWNLMNEPVWVGLDNYKTILFDSGSTFHTQFNNG 88 F+ P++ +VF+L P + +Y SF KW++ PV+VGL N++ LF S F Sbjct: 34 FIAPNLASVSVFMLFPLGFSLYMSFQKWDMFTPPVFVGLANFQN-LFTSDPLFLI----A 88 Query: 89 LKNTFIFXXXXXXXXXXXXXXXXXXXEHKKVKGKSLIQSIIYVPGLISISAGALIWLLLF 148 L N+ +F ++KVKG + ++I+++P IS A++W +F Sbjct: 89 LCNSVVFTVGTVIPTVLISLVVAGVL-NQKVKGIGIFRTIVFLPLAISSVVMAVVWQFIF 147 Query: 149 NKQLGMAGNVFG----SDVSWPANQPYAWXXXXXXXXXXXXXXNMIIYRASISGVSQDLY 204 N G+ + G + W N +A ++ A++ V + +Y Sbjct: 148 NTHNGLLNIMLGWIGIGPIPWLVNPGWAMASLCIVSVWRSVPFATVVLLAAMQEVPKTVY 207 Query: 205 ESAEMDGAGTIRRFTSITLPSIRFPLIYTFVMTTAGAFNVFGQPLMMT--DGGPRQSTHV 262 E+A++DGAG IR+F SIT+P IR + + V++ AF F ++ +GGP +T+V Sbjct: 208 EAAKIDGAGEIRQFISITVPFIRGAISFVVVISFIHAFQTFDLVYVLNGPNGGPELATYV 267 Query: 263 LMMYIRQLAFGNGESIAGMASAMAVL 288 L + + Q AF E G ASA+A++ Sbjct: 268 LGIMLFQHAFSFLE--FGYASALALV 291 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.326 0.140 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,419,850 Number of extensions: 660030 Number of successful extensions: 2158 Number of sequences better than 1.0e-05: 143 Number of HSP's gapped: 2001 Number of HSP's successfully gapped: 143 Length of query: 309 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 203 Effective length of database: 26,153,027 Effective search space: 5309064481 Effective search space used: 5309064481 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)