BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0376.0006.p (370 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value mll3590 [G] COG1653 ABC-type sugar transport system, periplasmic... 96 7e-20 Cgl1352 [G] COG1653 ABC-type sugar transport system, periplasmic... 62 2e-09 lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 5e-08 AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 5e-08 lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic... 54 5e-07 >mll3590 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 418 Score = 96.3 bits (238), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 149/346 (43%), Gaps = 47/346 (13%) Query: 1 MDQLVKDYNATN-PEIKVKHVIT---SDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQ 56 M Q++ D+NA + +IK+ + Y K+ T G+ PD+ HA R+P V Q Sbjct: 36 MKQMISDFNAAHVGKIKIDATTLEWGTPFYAKVQTSAAVGEA-PDVMTYHASRIPLAVSQ 94 Query: 57 GVLEPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKY--- 113 +LE +TA ++ + ++ T+DG QY VPLD H V+YYN+ LLKK Sbjct: 95 DLLEEITADDMSKMGLSASDFAQTTMGAVTVDGKQYAVPLDTHPIVLYYNRVLLKKAGVL 154 Query: 114 ----------NAESFLDDNVVTIDEMLSLQGKLDEGDYVVNDALLGWVILAQIQDLGGDI 163 N E F T+ ++ + G + + I + + GG++ Sbjct: 155 GDDGRPVGMKNKEEF----TATLQKLKDAGVEFPLGSVTADGNFMYRTIYSLVCQQGGEL 210 Query: 164 --------QENGKPAVNTPVMKQAFENVKKINDAGLMTPFGE--DGYLMFQSGNVLFSTD 213 +NGK N + Q + AGL + + + +F SG + Sbjct: 211 LTGNEFLAGDNGKKLANALAVLQGW------TKAGLQSTYTDYPATVALFTSGKAAMMIN 264 Query: 214 GTW--SSTAHAGVEGLNFGVTNVYSPTA-DKFTNRSSSHLFSMMKNKDR--SEEKVAGIG 268 G W + +G F V P DK + SH F++ KNK + S EK A + Sbjct: 265 GVWEVPTMTDLAKQGKLFDWGAVEIPVIFDKPCTYADSHSFAIPKNKGKEISPEKRAAVL 324 Query: 269 NFLEFIRENSIEWAKAGQIVASKQVNESPDFK----NYIQSFFTSN 310 + +I ++S+ WA AG I A K V E+ ++K N S T+N Sbjct: 325 EVISWIDKHSLFWATAGHIPAYKPVTETAEYKAMQPNATYSTLTAN 370 >Cgl1352 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 438 Score = 61.6 bits (148), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 73/312 (23%), Positives = 127/312 (40%), Gaps = 15/312 (4%) Query: 3 QLVKDYNATNPEIKVKHVITSDMYTKLSTVLN---SGKGVPDLTIIHADRVPGYVKQGVL 59 +L+ + A NP++KV+ V Y ++S N SG +PDL ++ + G Sbjct: 63 ELISRFEAENPDLKVQLVDAGANYAEVSQKFNAALSGGDLPDLVVLSDTEWFNFAINGAT 122 Query: 60 EPMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESFL 119 + V A + I Y+ ++ + +G Y +P + + YYNKDL K E Sbjct: 123 VNIDEV-AKRNNIDTSTYVDSLFNDYSHEGGHYGLPFARSTVLFYYNKDLWAKAGLEDRG 181 Query: 120 DDNVVTIDEM-LSLQGKLDEG-DYVVNDA--LLGWVILAQIQDLGGDIQENGKPAVNTPV 175 ++ E LQ +D G + DA L W + LGG+ E + + TP Sbjct: 182 PESWEEFSEWGPKLQEAMDSGFAHGWGDATNYLSWTFEGPMWSLGGNYSEGWESRLTTPE 241 Query: 176 MKQAFENVKKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLNFGVTNVY 235 +A E +K D G T D F +G + T ++ AG ++GV + Sbjct: 242 TIRAVEWLKSTVDEGFAT-VSTDVTNEFATGLIGSCIQSTGDLSSVAGAASFDWGVAALP 300 Query: 236 SPTADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIRE--NSIEWAK-AGQIVASKQ 292 +PT + + L SE++ F++F+ N+ W++ G + K Sbjct: 301 NPTGEGACPTGGAGL---GIPSGISEQRQDNALKFIDFLTNAANTGYWSRETGYVPVRKD 357 Query: 293 VNESPDFKNYIQ 304 PD +++ Sbjct: 358 AASDPDHAAFLE 369 >lin0762 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 417 Score = 57.0 bits (136), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 74/313 (23%), Positives = 140/313 (44%), Gaps = 27/313 (8%) Query: 1 MDQLVKDYNATNPEIKVKHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVLE 60 +++ + YN + + KVK+V+ ++ KL T + G+ +PD+ + + Y +GVLE Sbjct: 50 LEKQIDSYNKSQDKYKVKYVMQENVEEKLLTGIAGGE-LPDIIMWDRYQTALYAPKGVLE 108 Query: 61 PMTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAE--SF 118 P+ + + +K +++ ++ T Y +PL + +++YNK LL++ + + Sbjct: 109 PLDKLVK-EDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEAGVKPPTT 167 Query: 119 LDDNVVTIDEMLSLQG-KLDEGDYVVNDALLGWVILAQIQDLGGDI--QENGKPAVNTPV 175 D+ + G K+ + + D L + L Q GG++ +N K A N+ Sbjct: 168 WDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQA---GGELVTPDNKKTAFNS-- 222 Query: 176 MKQAFENV----KKINDAGLMTPFGEDGYLMFQSGNVLFSTDGTWSSTAHAGVEGLNFGV 231 +Q E + K ND + +DG F +G + +G W+ + VE L++GV Sbjct: 223 -EQGLEVLNYWDKMQNDLKVYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVENLDYGV 281 Query: 232 TN-VYSPTADKFTNRSSSHLFSMMKNKDRSEEKVAGIGNFLEFIR---ENSIEWAK-AGQ 286 P DK L + E G +F+++ EN +E+AK +G Sbjct: 282 VEPPKGPNGDKGAIMGGFGLVM-----PKQAEHKDGAWDFMKWWTTKPENGVEFAKISGW 336 Query: 287 IVASKQVNESPDF 299 + A+K E F Sbjct: 337 LPANKIAAEDEYF 349 >AGl1009 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 134 Score = 56.6 bits (135), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 0/269 (0%), Positives = 0/269 (0%), Gaps = 43/269 (15%) Query: 4 LVKDYNATNPEIKV--KHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVLEP 61 A ++ S + + + +Q Sbjct: 46 PKAKAPAVLQKLAQAVAAEGFSGIQINKALSSIDAHQ-ETSGSGRIQTLRVVARQKGAAV 104 Query: 62 MTAVTAAQPEIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKKYNAESFLDD 121 Sbjct: 105 164 Query: 122 NVVTIDEMLSLQGKL-----------------DEGDYVVNDALLGWVILAQIQDLGGDIQ 164 Sbjct: 165 ------------ 212 Query: 165 ENGKPAVNTPVMKQAFENVKKINDAGLMTP-----FGEDGYLMFQSGNVLFSTDGTWSST 219 Sbjct: 213 ---- 268 Query: 220 AHAGVEGLNFGVTNVYSPTADKFTNRSSS 248 Sbjct: 269 -- 295 >lin1841 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 414 Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 98/229 (42%), Gaps = 23/229 (10%) Query: 11 TNPEIKVKHVITSDMYTKLSTVLNSGKGVPDLTIIHADRVPGYVKQGVLEPMTAVTAAQP 70 T E+KV+ + ++ + KL T + S G PD+ + +P +V+ G L +T Sbjct: 60 TGIEVKVQVIPWANAHDKLLTAVASKSG-PDVVQMGTTWMPEFVEAGALLDITKDVEKSK 118 Query: 71 EIKQENYLPQAWSTGTIDGTQYTVPLDIHSNVMYYNKDLLKK--YNAESFLDDNVVTIDE 128 + + + P + T DG Y VP + V++Y DLLKK YN D + Sbjct: 119 NMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKKVGYNEAPKTWDELSDAAL 178 Query: 129 MLSLQGKLDEGDYVV--NDALLGWVILAQ----IQDLGGDIQENGKPAVNTPVMKQAFEN 182 LS +GK D + + N+ G++ Q + D G N KP V+T +F Sbjct: 179 KLSKRGK-DMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGTPVFNKKPFVDTVTYLDSFIK 237 Query: 183 VKKINDAGL----MTPFGEDGYL-MFQSGNVLFST--------DGTWSS 218 D L FG DG + MF SG + +T DG W++ Sbjct: 238 NGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDTAPDIDGKWAT 286 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.313 0.132 0.375 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 27,478,716 Number of extensions: 1162517 Number of successful extensions: 1528 Number of sequences better than 1.0e-05: 18 Number of HSP's gapped: 1543 Number of HSP's successfully gapped: 18 Length of query: 370 Length of database: 38,378,431 Length adjustment: 108 Effective length of query: 262 Effective length of database: 25,922,359 Effective search space: 6791658058 Effective search space used: 6791658058 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 116 (49.3 bits)