BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0017.p (555 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic ... 180 6e-45 BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic... 95 3e-19 BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic ... 61 5e-09 BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic ... 60 8e-09 YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic... 57 8e-08 >SP1796 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 538 Score = 180 bits (456), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 143/486 (29%), Positives = 244/486 (50%), Gaps = 34/486 (6%) Query: 89 NEKLSFQQMEKNTNIHINFQHSTEASAEAFSLLMSSGKLPDIIYND-LWGTDSGKYGAQG 147 NEKL Q++EK T +HI++ + AE +L +SSG LPD I+ND D + +G Sbjct: 64 NEKLILQRLEKETGVHIDWTNYQSDFAEKRNLDISSGDLPDAIHNDGASDVDLMNWAKKG 123 Query: 148 ALLPLEDLIDQYAPNFKKILDDHPDIRGQITSPEGHIYYLPNLV-----LDSQDLTQMFP 202 ++P+EDLID+Y PN KKILD+ P+ + +T+P+GHIY P + +S Sbjct: 124 VIIPVEDLIDKYMPNLKKILDEKPEYKALMTAPDGHIYSFPWIEELGDGKESIHSVNDMA 183 Query: 203 QVRSDWVEKLGLSMPQTTEDWYNMLKAFREQDPNGNGKKDEIPLVTVN---LENIMMLFA 259 + DW++KLGL MP+TT+D +L+AF+ DPNGNG+ DEIP ++ E+ LFA Sbjct: 184 WINKDWLKKLGLEMPKTTDDLIKVLEAFKNGDPNGNGEADEIPFSFISGNGNEDFKFLFA 243 Query: 260 PAFGV----EYGFFVDNGEVKYGPNDPRFKDVVAYLNRLYKEQLLDPNYLVDTTFQTLTE 315 AFG+ ++ ++G+V + ++ +K+ V ++ +L ++ L+D + + + Sbjct: 244 -AFGIGDNDDHLVVGNDGKVDFTADNDNYKEGVKFIRQLQEKGLIDKEAF-EHDWNSYIA 301 Query: 316 KVTTDVAGAWFGWSGSYMGNFTTLMEGKHDTFKIAAAIPPKGPNGDQRHVSFR--WQAAA 373 K G +F W + N T G ++++ + + GP+G Q+HV+ A Sbjct: 302 KGHDQKFGVYFTWDKN---NVT----GSNESYDVLPVLA--GPSG-QKHVARTNGMGFAR 351 Query: 374 HGLAVSSKTAHPEEVMKWLDYQYSDEGILLNNFGVEG--KSYDLVNGEPVYKKEVTHPTN 431 + ++S + E KW+D QY+ + NN+G G K ++ + P N Sbjct: 352 DKMVITSVNKNLELTAKWIDAQYAPLQSVQNNWGTYGDDKQQNIFELDQASNSLKHLPLN 411 Query: 432 GLTNTQELLNHTIGGGSWATVADTRYAEQIR---EANGQTENPLEIYKDYIDFDAKLPPV 488 G T EL T GG A + D+ Y + +A + + E Y Y+ P V Sbjct: 412 G-TAPAELRQKTEVGGPLA-ILDSYYGKVTTMPDDAKWRLDLIKEYYVPYMSNVNNYPRV 469 Query: 489 QFTAEENEIVVPLMADIQTYVAETINAQIMGRQSFDDYDKVMKQLEQMGIGEVLKQYQAA 548 T E+ + + + AD+ Y+ I+ ++D K+LE+ G+ + L Q Sbjct: 470 FMTQEDLDKIAHIEADMNDYIYRKRAEWIVNGNIDTEWDDYKKELEKYGLSDYLAIKQKY 529 Query: 549 YERFKG 554 Y++++ Sbjct: 530 YDQYQA 535 >BS_lplA [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 502 Score = 95.1 bits (235), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/343 (26%), Positives = 163/343 (47%), Gaps = 36/343 (10%) Query: 93 SFQQMEKNTNIHINFQHSTEAS-AEAFSLLMSSGKLPD-IIYNDLWG--TDSGKYGAQGA 148 S + +EK T I ++S + F+++M+SG++P I+ D S K GA Sbjct: 56 SLKALEKYTGKEIKVTWVPDSSYNDKFNIVMASGEMPHAIVIKDKSAGFIKSVKAGAFWE 115 Query: 149 LLPLEDLIDQYAPNFKKILDDHPDIRGQITSPEGHIYYLPNLVLDSQDLTQMFPQVRSDW 208 L P Y ++K + I +S G +Y + ++DL + +R+DW Sbjct: 116 LSP-------YLKDYKNLSQADEKILKN-SSVNGEVYG----IYRTRDLIRACMIIRTDW 163 Query: 209 VEKLGLSMPQTTEDWYNMLKAFREQDPNGNGKKDEIPLVT---VNLEN-----IMMLFAP 260 ++ +GL MP+T +D+Y +LKAF+E+DP+GNGK D +V + L N ++ ++ Sbjct: 164 LKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGMVVPKWMGLGNGSPWDVLQIW-- 221 Query: 261 AFGVEYGFFVDNGEVKYGPNDPRFKDVVAYLNRLYKEQLLDPNYLVDTTFQTLTEKVTTD 320 FG + V+NG++ + D + + +LY E L++ ++ V + + + V Sbjct: 222 -FGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEGLINKDFAVMDSAK-WNDPVVKG 279 Query: 321 VAGAWFGWSGSYMGNFTTLM----EGKHDTFKIAAAIPPKGPNGDQRHVSFRWQAAAHGL 376 AG +GS + M E D I ++ +GPNG + + + Sbjct: 280 KAGVIVD-TGSRASQIQSAMEEADESNKDIIDIVGSL--EGPNGKRTFPTSGYSGMITIP 336 Query: 377 AVSSKTAHP-EEVMKWLDYQYSDEGILLNNFGVEGKSYDLVNG 418 S KT +EV+ +LD E +L N GV+G++Y+L +G Sbjct: 337 KSSVKTEKELKEVLSFLDKMNDKEAQILTNNGVKGRNYELKDG 379 >BH0482 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 512 Score = 60.8 bits (146), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 79/344 (22%), Positives = 143/344 (41%), Gaps = 40/344 (11%) Query: 94 FQQMEKNTNIHINFQHSTEASAE-AFSLLMSSGKLPDII-YNDLWGTDSGKYGAQGALLP 151 +++E+ TN +++ +A E + ++SG LP +I D + G Sbjct: 71 IKEIEELTNTNLDLIWVPDAVKEDRVNAALASGNLPKVITLQDFRTSSVLNAFRSGQFWE 130 Query: 152 LEDLIDQYAPNFKKILDDHPDIRGQITSPEGHIYYLPNLVLDSQDLTQMFPQVRSDWVEK 211 + +D++ PN L + + + S +G IY + + L++ +R DW+E Sbjct: 131 IGPYLDEF-PN----LSEMNETILENVSVDGKIYG----IYRERPLSRQGVVIRQDWLEN 181 Query: 212 LGLSMPQTTEDWYNMLKAFREQDPNGNGKKDEIPLVTVN--LENIMMLFAPAFGV--EYG 267 LGL MP E+ Y + +AF DPNG+G D + N + A G E+G Sbjct: 182 LGLEMPTNLEELYEVARAFTYDDPNGSGADDTVGFTDRNDLIFGAFKTLASYHGTPNEWG 241 Query: 268 FFVDNGEVKYGPNDPRFKDVVAYLNRLYKEQLLDPNYLVDTTFQTLTEKVTTDVAGAWFG 327 F D G++ + + + Y+ LY E L++ + V + Q +T G Sbjct: 242 -FDDEGKLMPEFMTDEYVETMNYMKSLYDEGLINTEFPVTSKEQQQELFMT--------G 292 Query: 328 WSGSYMGNFT---TLMEGKHDT---FKIAAAIPPKGPNGDQRHVSFRWQAAAHG--LAVS 379 +G Y+GN L + D ++A GP+G+ R W H A+ Sbjct: 293 RAGIYVGNMVDARNLRDKAKDINPEMEVAITNRIAGPDGEDR----VWAQGGHNGIFAIP 348 Query: 380 SKTAHPE----EVMKWLDYQYSDEGILLNNFGVEGKSYDLVNGE 419 + E ++ + D ++ L +G+E Y+ ++GE Sbjct: 349 KSSVETEAELKRILAFFDRIAEEDVYNLMAYGIEDVHYETIDGE 392 >BH1064 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 550 Score = 60.5 bits (145), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 29/206 (14%) Query: 120 LLMSSG-KLPDII-YNDLWGTDSGKYGAQGALLPLEDLIDQYA-PNFKKILDDHPDIRGQ 176 L+MSSG KLPD+ ND + G ++P+++ I+ YA P K++ + P Sbjct: 96 LMMSSGEKLPDVFQVNDT--AIKADLLSSGLVMPVDEAIETYASPRLKQLFEQFPQAFYP 153 Query: 177 ITSPEGHIYYLPNLVLDSQDLTQMFPQVRSDWVEKLGLSMPQTTEDWYNMLKAFREQDPN 236 T +G Y +P + T ++ +R DW++K L P T E+ +++ F +DPN Sbjct: 154 STK-DGVRYGIPRFSGGNGSDTLLW--IRQDWLDKFDLEPPTTLEELEHIMDVFVNEDPN 210 Query: 237 GNGKKDEIPLVTV---------NLENIMMLFAPAFGVEYGFFV-------DNGEVKYGPN 280 GK D I + N+ + +F +G FV D+G + YG Sbjct: 211 ETGKNDTIGITFAAGDYGFRGGNIADSSWVFGA-----FGDFVPGAWSKGDDGSLVYGSI 265 Query: 281 DPRFKDVVAYLNRLYKEQLLDPNYLV 306 P KD +A ++ Y++ L ++ + Sbjct: 266 QPSMKDGLAKIHEWYEKGYLATDFAI 291 >YPO3472 [G] COG1653 ABC-type sugar transport system, periplasmic component Length = 437 Score = 57.0 bits (136), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 151/374 (40%), Gaps = 52/374 (13%) Query: 97 MEKNTNIHINFQHSTEASAEAFSLLMSSGKLPDIIYNDLWGTDSGKYGAQGALLPLE--D 154 EK T I I + ++T + + + LPD+I+ND G++ G + P+E + Sbjct: 55 FEKKTGIKIEYFNATTDFEQRLARAAAGNALPDLIFND--AVAIGQFVQLGIVEPIEPKN 112 Query: 155 LIDQYAPNFKKILDDHPDIRGQITSPEGHIYYLPNLVLDSQDLTQMFPQVRSDWVEKLGL 214 +I + I D I +G Y +P S +F VR DW EKLGL Sbjct: 113 IIGG-----ENIFDTAWKSTQYI---DGKYYGVPT----SAQTFALF--VRKDWREKLGL 158 Query: 215 SMPQTTEDWYNMLKAFREQDPNGNGKKDEIPLVT--VNLENIMMLFAPAFGVEYG--FFV 270 P+ +D + KAF DP+GNGK D + F ++ + G F Sbjct: 159 EQPKNWQDISTLAKAFTFNDPDGNGKNDTYGFILPGSTTRGYASWFISSYLWQAGGDFIR 218 Query: 271 DNGEVKYGPN--DPRFKDVVAYLNRLYKEQLLDPNYLVDTTFQTLTEKVTTDVAGAWFGW 328 GE K+ + +P + ++++ + ++ + P + TT + + +G +F Sbjct: 219 PAGEGKFIASLEEPAATETLSFMRGMVCDKTVQPGAINATTADAIPS-FRSGQSGMFF-- 275 Query: 329 SGSYMGNFTTLMEGKHDTFKIAAAIPPKGPNGDQRHVSFRWQAAAHGLAVSSKTAHPEEV 388 SG Y L + T PP GP G + + S K A + Sbjct: 276 SGPY---HIALFDKDPGTEAFEVIPPPTGPKG---QATLAEGTTVFMMKSSQKKAAAQ-- 327 Query: 389 MKWLDYQYSDEGILLNNFGVEGKSYDLVNGEPVYKKEVTHPTNGLTNTQELLNHTIGGGS 448 K++++ S EG + G+ K+ PV + + N L +T+ + + Sbjct: 328 -KFIEFMISPEGQQI-GMGMGTKNM------PVVRLSI----NKLVDTKAVYDDP----R 371 Query: 449 WATVADTRYAEQIR 462 WA AD YAEQ R Sbjct: 372 WAIFADL-YAEQGR 384 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.315 0.133 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 41,573,258 Number of extensions: 1788638 Number of successful extensions: 2282 Number of sequences better than 1.0e-05: 6 Number of HSP's gapped: 2274 Number of HSP's successfully gapped: 6 Length of query: 555 Length of database: 38,378,431 Length adjustment: 111 Effective length of query: 444 Effective length of database: 25,576,357 Effective search space: 11355902508 Effective search space used: 11355902508 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (22.0 bits) S2: 118 (50.1 bits)