BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0016.p (321 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value BH0484 [G] COG4209 ABC-type polysaccharide transport system, per... 209 4e-54 BH1065 [G] COG4209 ABC-type polysaccharide transport system, per... 207 1e-53 BH1911 [G] COG4209 ABC-type polysaccharide transport system, per... 199 7e-51 SP1798 [G] COG4209 ABC-type polysaccharide transport system, per... 193 3e-49 BS_lplB [G] COG4209 ABC-type polysaccharide transport system, pe... 178 1e-44 >BH0484 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 325 Score = 209 bits (533), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 119/321 (37%), Positives = 186/321 (57%), Gaps = 5/321 (1%) Query: 2 AVPLNAAKAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKD 61 A+P+ +A A S + +R LKR+ N+YLYLM+LP ++YFLIF+Y PM+G IIAF+D Sbjct: 9 ALPIESA-APSIPKKVRRQQ-KLKRIFRNKYLYLMILPGLVYFLIFKYVPMWGLIIAFQD 66 Query: 62 FNPFSGVAGSPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXX 121 + PF GV GS WVGFK+FE+ F FF+LL+NT ++ Y+L+F FP Sbjct: 67 YQPFLGVTGSEWVGFKHFERLFTEPTFFQLLRNTLVLFLYNLIFFFPVPIILAVLLNEIR 126 Query: 122 XXXXXSFLQTVSYLPHFISLIVICGMI-IDFTKPXXXXXXXXXXXXXXXEPIQFLILPEW 180 F+QT+ Y+PHF+S +++ + + FT + + FL+ +W Sbjct: 127 LMVFKRFVQTMIYIPHFMSWVIVVSLTYVLFTTD--GGVINEIIYSITGKNVNFLMSEDW 184 Query: 181 FRTIYVGSGMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXX 240 FR +Y+ +W+ GW +IIY AA++ I+PSLYEAA +DGA R++Q+ HITLP I Sbjct: 185 FRPLYILQVIWREAGWATIIYFAAIAAIDPSLYEAAKMDGANRFRQIWHITLPAIRSVIV 244 Query: 241 XXXXXXXXXXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVI 300 ++ + L+ N A++ T+VY G+ E +S+S AVG F S++ Sbjct: 245 VLLILKIGDILELGFEHVFLMLNAMNREVAEIFDTYVYTAGLKEGQFSYSTAVGFFKSIV 304 Query: 301 NFTLLVLANRISRKTTENSLW 321 +++LAN +++K E ++ Sbjct: 305 GLIMVMLANWLAKKFGEEGVY 325 >BH1065 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 317 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 112/307 (36%), Positives = 174/307 (56%), Gaps = 6/307 (1%) Query: 8 AKAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSG 67 AK RKL K+ + +R L+++L+P ++ LIF+Y PM+G ++AF+D+ P+ G Sbjct: 10 AKTVERKL--KKQKWNFRRTWQ---LHVLLIPALVLALIFQYGPMFGIVMAFQDYKPWLG 64 Query: 68 VAGSPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXS 127 GS WVG ++F FE Y +++ NT ++S ++F Sbjct: 65 FTGSEWVGLQHFITMFEYDYAKQVIWNTLVISVLKMIFGLIVPIIVALLLNEMYQMVVKR 124 Query: 128 FLQTVSYLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVG 187 +QT+ YLP+F+S +++ G++ID P +PI FL +WFRT V Sbjct: 125 TVQTIIYLPYFLSWVILGGILIDVLSPDGGIVNQALGLFGI-DPIFFLGSNDWFRTTVVI 183 Query: 188 SGMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXX 247 S +W+ G+N+I++LAA++ +NP+LYEAAVVDGA RWKQ HITLP +LP Sbjct: 184 SDLWKETGFNTIVFLAAITAVNPNLYEAAVVDGANRWKQTLHITLPAMLPIIIVVATLSL 243 Query: 248 XXXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVL 307 +D+I LYNP Y T D+I T+VYR ++ D+S+ AVGLF S+I+ L+++ Sbjct: 244 GNILNAGFDQIFNLYNPLVYQTGDIIDTYVYRVSLVNGDFSYGTAVGLFKSLISLVLIII 303 Query: 308 ANRISRK 314 R++ K Sbjct: 304 GYRLAYK 310 >BH1911 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 319 Score = 199 bits (505), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 113/313 (36%), Positives = 165/313 (52%), Gaps = 2/313 (0%) Query: 9 KAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGV 68 KA S K++ +R L L +YLYLM LP V + L+F Y P++G +AF++F P Sbjct: 7 KAHS-KIRVQRRKKILTTLKQQKYLYLMSLPFVAWVLVFNYFPLWGWTMAFQNFRPGLSF 65 Query: 69 AGSPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSF 128 WVG ++F + F+ F+ +L+NT MS L+ F Sbjct: 66 FEQEWVGLQHFIELFQDNRFYLVLRNTLAMSIMGLIVGFTMPILFAVLLNEVRHMVFKRT 125 Query: 129 LQTVSYLPHFISLIVICGMIID-FTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVG 187 +QTVSYLPHF+S +V+ G++ + +P+QF+ EWF I Sbjct: 126 VQTVSYLPHFVSWVVVAGIVTKMLSIDGGIVNQLLMAFGFVDQPVQFMAKGEWFWVIVTL 185 Query: 188 SGMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXX 247 S +W+ +GWNSII+LAA++GI+P LYEAA VDGA RW+Q+ HITLPGI P Sbjct: 186 SDLWKEMGWNSIIFLAAMAGIDPQLYEAAKVDGASRWRQIWHITLPGIRPTILVILILSI 245 Query: 248 XXXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVL 307 ++K LL NP ++V+ + G+ YS+ A+G+FNSV+ LL L Sbjct: 246 GHLMAIGFEKQFLLGNPLVVDYSEVLDLYALNYGLGLGRYSYGTAIGIFNSVVCIILLFL 305 Query: 308 ANRISRKTTENSL 320 AN I ++ T S+ Sbjct: 306 ANGIFKRFTNQSV 318 >SP1798 [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 305 Score = 193 bits (490), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 110/306 (35%), Positives = 162/306 (52%), Gaps = 4/306 (1%) Query: 15 LQAKRSSVSL-KRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGVAGSPW 73 + +K VSL +R+ + L LM +P ++ IF+Y PMYG +IAFKD+NP G+ GS W Sbjct: 1 MNSKAKQVSLWERIKKQKLLLLMTVPGLVLTFIFKYIPMYGVLIAFKDYNPLKGILGSDW 60 Query: 74 VGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSFLQTVS 133 +GF F KF S F LL NT +S Y LL F +Q + Sbjct: 61 IGFSEFTKFISSPNFGILLANTLKLSIYGLLLGFLPPIILAIMLNQLLSEKVKKRIQLIL 120 Query: 134 YLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVGSGMWQS 193 Y P+FIS++VI GMI F + FL P++FR +Y+ SG+WQ Sbjct: 121 YAPNFISVVVIVGMIFLFFSVGGPINNFLSMFGMKAD---FLTNPDFFRPLYIFSGIWQG 177 Query: 194 LGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXXXXXXXX 253 +GW S +Y A L ++P+L EAA +DGA ++++ HI +P + P Sbjct: 178 MGWASTLYTATLVNVDPALVEAARLDGANIFQRIWHIDIPALKPIMVIQFVLAAGGIMNV 237 Query: 254 XWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVLANRISR 313 ++K L+ T+++IST+VY+ G++ DYS+S AVGLFN+VIN LLV N+I + Sbjct: 238 GYEKAFLMQTSLNLPTSEIISTYVYKVGLVSGDYSYSTAVGLFNAVINVVLLVAVNQIVK 297 Query: 314 KTTENS 319 + Sbjct: 298 RMNNGE 303 >BS_lplB [G] COG4209 ABC-type polysaccharide transport system, permease component Length = 318 Score = 178 bits (451), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 109/312 (34%), Positives = 167/312 (53%), Gaps = 1/312 (0%) Query: 9 KAQSRKLQAKRSSVSLKRLMSNRYLYLMLLPTVLYFLIFEYKPMYGAIIAFKDFNPFSGV 68 K + L A + + L +++LYL+L+P +LYFLIF+Y PM+G +IAFKD++P+ G Sbjct: 7 KRDAPVLTAGKGISWMAALKRDKWLYLLLIPGLLYFLIFKYLPMWGVLIAFKDYSPYLGF 66 Query: 69 AGSPWVGFKNFEKFFESYYFFRLLKNTFLMSFYSLLFIFPXXXXXXXXXXXXXXXXXXSF 128 S WVGF F+ FF + FFRLL+NT +++ LLF FP Sbjct: 67 WKSEWVGFDYFKDFFMNPDFFRLLRNTLMLASLDLLFAFPAPLILALLLNEVRKAVYKRC 126 Query: 129 LQTVSYLPHFISLIVICGMIIDFTKPXXXXXXXXXXXXXXXEPIQFLILPEWFRTIYVGS 188 +QT Y+PHF+S ++ + F E I FL +WFR + V Sbjct: 127 IQTFIYVPHFVSWTIVVSITFVFF-TVDTGVINKLIMSLTGEQISFLSDADWFRPMIVMQ 185 Query: 189 GMWQSLGWNSIIYLAALSGINPSLYEAAVVDGAGRWKQLTHITLPGILPXXXXXXXXXXX 248 +W+ GW +I++LAAL+ ++ YEAA++DGAGR++++ HITLP I Sbjct: 186 SIWKETGWGTILFLAALATVDQEQYEAAIMDGAGRFRRMWHITLPAIRSTIIVLLILRIG 245 Query: 249 XXXXXXWDKIILLYNPGTYVTADVISTFVYRRGVMEADYSFSAAVGLFNSVINFTLLVLA 308 ++++ L+ N AD+ T+VY G+ + YS+S AVGLF SV+ L+ A Sbjct: 246 SFLNLGFEQVYLMTNSLNRSVADIFDTYVYMMGITQGAYSYSTAVGLFKSVVGIILIFGA 305 Query: 309 NRISRKTTENSL 320 N I++K + L Sbjct: 306 NYIAKKFDQEGL 317 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.328 0.142 0.442 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 18,563,493 Number of extensions: 642018 Number of successful extensions: 1895 Number of sequences better than 1.0e-05: 50 Number of HSP's gapped: 1848 Number of HSP's successfully gapped: 50 Length of query: 321 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 215 Effective length of database: 26,153,027 Effective search space: 5622900805 Effective search space used: 5622900805 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 116 (49.3 bits)