BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0373.0015.p (295 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SP1797 [G] COG0395 ABC-type sugar transport system, permease com... 254 9e-68 BH0481 [G] COG0395 ABC-type sugar transport system, permease com... 250 2e-66 BS_lplC [G] COG0395 ABC-type sugar transport system, permease co... 244 1e-64 BS_ytcP [G] COG0395 ABC-type sugar transport system, permease co... 239 3e-63 BH1066 [G] COG0395 ABC-type sugar transport system, permease com... 207 1e-53 >SP1797 [G] COG0395 ABC-type sugar transport system, permease component Length = 305 Score = 254 bits (650), Expect = 9e-68, Method: Compositional matrix adjust. Identities = 126/297 (42%), Positives = 199/297 (67%), Gaps = 7/297 (2%) Query: 3 IKRSIPEMIFDS----CNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFWPKGFN 58 +K SI + FD N + ++F + L P+ Y++V+SF D + + +SF P + Sbjct: 10 MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWT 69 Query: 59 ADAYKLVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFT 118 + Y+ VF DQ I + N+ +Y + ++L+ AYPLS+++L GR I F++ T Sbjct: 70 VEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVT 129 Query: 119 MFFSGGLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGA 178 MFF GGL+P YL V+ELG+ +T WA+++PGAV+ +N+I+ R +FQ +P+ L+E+A IDGA Sbjct: 130 MFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGA 189 Query: 179 HDFRILLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSS 238 +D +I +I+LPL+ P++ V+ L+ VG WNS+F AMIY++D NL PLQL+LR+ILIQS Sbjct: 190 NDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ 249 Query: 239 -AQNMLAGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALK 294 Q+M+ ++E IK+ATI+I+++P++++YPF QKYF KG+M G+LK Sbjct: 250 PGQDMIGA--QAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLK 304 >BH0481 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 250 bits (639), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/294 (41%), Positives = 195/294 (66%), Gaps = 2/294 (0%) Query: 1 VVIKRSIPEMIFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFWPKGFNAD 60 +V +S+ +F+ N LFL S + P +++ SF+ + +P F+ D Sbjct: 1 MVHDQSLGSRVFNIFNYLFLFLFSMICFLPFVHIVAGSFASVEEVLQKRFILFPTTFSLD 60 Query: 61 AYKLVFEDQRIWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMF 120 AY+ +F I+ + + + + GT ++ LT+L AY LSR++L+GR ++M +VFTM Sbjct: 61 AYRYIFSTDIIFRSLIISILVTVVGTGFSMFLTSLMAYGLSRKDLDGRRVLMFLVVFTML 120 Query: 121 FSGGLIPAYLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHD 180 FSGG+IP +L VR LGL DT WAL++P A++AFNLI+++ FFQ+IP+SL ESAKIDG +D Sbjct: 121 FSGGMIPTFLVVRSLGLLDTYWALIIPTAINAFNLIILKNFFQNIPESLEESAKIDGCND 180 Query: 181 FRILLRIVLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQ 240 I RIV PLSMP +A ++LFYAV +WN++ A++YL D +++P+Q++LR+I+I SS Sbjct: 181 VGIFFRIVFPLSMPAIATISLFYAVTYWNTFMQAILYLNDSSMWPIQVLLRQIVIMSSG- 239 Query: 241 NMLAGVXXXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALK 294 M + ++IK A I++AT+P+L++YPF+QK+F KG ++G++K Sbjct: 240 -MQGDLTELGAGFVMPPEQTIKMAVIVVATIPVLIVYPFIQKHFAKGALLGSVK 292 >BS_lplC [G] COG0395 ABC-type sugar transport system, permease component Length = 295 Score = 244 bits (624), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 123/284 (43%), Positives = 177/284 (62%), Gaps = 4/284 (1%) Query: 11 IFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFWPKGFNADAYKLVFEDQR 70 +FD CN+LFL + + P Y++ SF+ +A +PK F DAYK VF Sbjct: 15 VFDVCNILFLGGVGAITILPFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPT 74 Query: 71 IWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFSGGLIPAYL 130 + G + + GT + L T AYPL++R+++GR+L++ ++F+M FSGG+IP YL Sbjct: 75 FLRSMGVSIFITVVGTAVQLFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYL 134 Query: 131 NVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFRILLRIVLP 190 V+ LGL DT WAL+LP A++ FNLI+++ FFQ +P L ESAKIDG + + RI LP Sbjct: 135 VVKSLGLLDTYWALILPMAINPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALP 194 Query: 191 LSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNMLAGVXXXX 250 LS PV+A LFYAVG WN +F A++Y+ D +PLQ++LR++ I S L Sbjct: 195 LSKPVIATFALFYAVGIWNDFFHALLYINDSAKWPLQMVLRQVTILSD----LTATNGDT 250 Query: 251 XXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALK 294 + IK A I+IAT+PIL +YPFLQK+F KG++IG++K Sbjct: 251 MQNAVPPEQGIKLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >BS_ytcP [G] COG0395 ABC-type sugar transport system, permease component Length = 286 Score = 239 bits (610), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 119/284 (41%), Positives = 188/284 (66%), Gaps = 3/284 (1%) Query: 11 IFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFWPKGFNADAYKLVFEDQR 70 +FD FL+ + + + P +V+ +SF+ + + + P F+ DAY+ +F Sbjct: 5 LFDMLIYGFLLMFALICVLPFIHVIAASFATVEEVVSKKFILIPTTFSLDAYRYIFSTDI 64 Query: 71 IWTAYGNTFIYVIAGTLINLVLTTLGAYPLSRRNLEGRSLIMAFIVFTMFFSGGLIPAYL 130 I+ + + + GT +++ L++L AY LSRR+L GR +M +VFTM FSGG+IP +L Sbjct: 65 IYKSLLVSVFVTVIGTAVSMFLSSLMAYGLSRRDLIGRQPLMFLVVFTMLFSGGMIPTFL 124 Query: 131 NVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQSIPDSLIESAKIDGAHDFRILLRIVLP 190 V+ LGL D+ WAL+LP A++AFNLI+++ FFQ+IP SL ESAKIDG +D I +IVLP Sbjct: 125 VVKSLGLLDSYWALILPTAINAFNLIILKNFFQNIPSSLEESAKIDGCNDLGIFFKIVLP 184 Query: 191 LSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNMLAGVXXXX 250 LS+P +A ++LFYAV +WN++ A++YL D +P+Q++LR+I+I SS + G Sbjct: 185 LSLPAIATISLFYAVTYWNTYMTAILYLNDSAKWPIQVLLRQIVIVSSG---MQGDMSEM 241 Query: 251 XXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALK 294 ++IK A I++AT+P+LL+YPF+QK+F KG ++G++K Sbjct: 242 GSGSPPPEQTIKMAVIVVATIPVLLVYPFIQKHFAKGALLGSVK 285 >BH1066 [G] COG0395 ABC-type sugar transport system, permease component Length = 293 Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 115/288 (39%), Positives = 174/288 (60%), Gaps = 8/288 (2%) Query: 11 IFDSCNVLFLIFCSFLFLYPMWYVLVSSFSDAHAIAAGEVSFWPKGFNADAYKLVFEDQR 70 +F + N FL+ + L + P+ ++ S S + A AA V F P F DAY+ + Sbjct: 11 VFTAFNYTFLLLFAVLCILPLVHIFAVSLSGSGAAAANLVMFLPVDFTLDAYERTIANDN 70 Query: 71 IWTAYGNTFIYVIAGTLINLVLTTLGAYPLSR--RNLEGRSLIMAFIVFTMFFSGGLIPA 128 ++ + + V+ GT+I++ AY LS+ R+ +GR + F V TM F+GGL+P Sbjct: 71 FIRSFLISVVRVVLGTVISMGAMLCAAYALSKEDRDFKGRKFYIWFFVITMLFNGGLVPT 130 Query: 129 YLNVRELGLYDTRWALLLPGAVSAFNLIVMRTFFQS-IPDSLIESAKIDGAHDFRILLRI 187 Y+ V LGL +T WAL+LP A++AFNLI++ FF++ +P SL ESA IDGA+ F+I L+I Sbjct: 131 YMVVTGLGLTNTIWALVLPPAINAFNLILLLNFFRTAVPKSLEESAFIDGANHFQIFLKI 190 Query: 188 VLPLSMPVLAVMTLFYAVGHWNSWFPAMIYLQDRNLFPLQLILREILIQSSAQNMLAGVX 247 LP+S+P +A ++LF V HWNSWF MIY D +PLQ L+ I++Q + Sbjct: 191 YLPISVPAIATVSLFTMVFHWNSWFDGMIYNNDARNYPLQTFLQTIVVQQDFSQITDAET 250 Query: 248 XXXXXXXXXISESIKFATIIIATVPILLIYPFLQKYFVKGVMIGALKE 295 +++ A I IA +P+L++YPF+QKYFVKG+++GA KE Sbjct: 251 LRNLS-----QRTVQAAQIFIAALPMLIVYPFIQKYFVKGIVLGAEKE 293 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.331 0.144 0.443 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 19,171,308 Number of extensions: 685530 Number of successful extensions: 3945 Number of sequences better than 1.0e-05: 154 Number of HSP's gapped: 3717 Number of HSP's successfully gapped: 154 Length of query: 295 Length of database: 38,378,431 Length adjustment: 106 Effective length of query: 189 Effective length of database: 26,153,027 Effective search space: 4942922103 Effective search space used: 4942922103 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.9 bits) S2: 115 (48.9 bits)