BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0373.0004.p
         (205 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SA2358 [K] COG1309 Transcriptional regulator                           86   3e-17
L108801 [K] COG1309 Transcriptional regulator                          74   1e-13
SA2165 [K] COG1309 Transcriptional regulator                           70   3e-12
CAC0201 [K] COG1309 Transcriptional regulator                          63   4e-10
lin0482 [K] COG1309 Transcriptional regulator                          62   7e-10

>SA2358 [K] COG1309 Transcriptional regulator
          Length = 189

 Score = 86.3 bits (212), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 52/181 (28%), Positives = 93/181 (51%), Gaps = 6/181 (3%)

Query: 24  DPRVFRTRQLIREAFRELLQHKGFDAITIKDIAQRATINRATFYAHYEDKYALLDEIIEQ 83
           DPR+ RT+QL+ +AF ++ + K    IT+KDI   AT+NRATFYAH+ DK  LLD  +  
Sbjct: 8   DPRIVRTKQLLVDAFLKISREKKLSQITVKDITDIATLNRATFYAHFTDKEDLLDYTLSV 67

Query: 84  AFLKMIPGQVANAQEFTDETCSQLILMTYRYIVDFYQICRMDSKSIATLVDSKIKKMLRQ 143
             LK +   ++ +    ++    + +    YI D  + C ++S++       +I   L  
Sbjct: 68  TILKDLNDNLSISNVINEKVLRNIFISIASYIKDAAKSCELNSEAFCNKAHQRINNELED 127

Query: 144 IIESIFMKGDVHRHAR--IVSAMT--GSAIHGAAHDWLTAGENDRPDLLVDIVRPYVMNG 199
           I  +I ++     H R  IV++ +   + I G A  W    + +  D+ +D   P++++ 
Sbjct: 128 IF-AIMLENSYPEHQRDIIVNSASFLAAGISGLALHWFNTSQ-ETADVFIDRNLPFLIHH 185

Query: 200 L 200
           +
Sbjct: 186 I 186


>L108801 [K] COG1309 Transcriptional regulator
          Length = 204

 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 1/73 (1%)

Query: 19 MVNQEDPRVFRTRQLIREAFRELLQHKGFDAITIKDIAQRATINRATFYAHYEDKYALLD 78
          MV  +D RV RTR+LI +AF  LL+ K F+ I+I++IA  A INRATFYAHY DK  L D
Sbjct: 1  MVKSDDLRVKRTRKLISQAFFGLLRKKKFEKISIQEIADSAMINRATFYAHYADKQDLYD 60

Query: 79 EIIEQAFLKMIPG 91
           +I+Q FL    G
Sbjct: 61 SLIDQ-FLASFTG 72


>SA2165 [K] COG1309 Transcriptional regulator
          Length = 207

 Score = 69.7 bits (169), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 32/56 (57%), Positives = 41/56 (73%)

Query: 22 QEDPRVFRTRQLIREAFRELLQHKGFDAITIKDIAQRATINRATFYAHYEDKYALL 77
          +ED R+ +T+  I++AF +LLQ K  + ITI+DI  RA INR TFY HYEDKY LL
Sbjct: 2  KEDRRIRKTKSSIKQAFTKLLQEKDLEKITIRDITTRADINRGTFYLHYEDKYMLL 57


>CAC0201 [K] COG1309 Transcriptional regulator
          Length = 194

 Score = 62.8 bits (151), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 58/101 (57%), Gaps = 3/101 (2%)

Query: 19  MVNQEDPRVFRTRQLIREAFRELLQHKGFDAITIKDIAQRATINRATFYAHYEDKYALLD 78
           M ++ D R+ +TR  I+  F +LL  K F+ ITI++I  +A INR+TFY HY DKY L +
Sbjct: 1   MQSKIDLRIIKTRTNIKNTFIDLLFEKEFNEITIQNILDKALINRSTFYNHYSDKYELAE 60

Query: 79  EIIEQAFLKMIPGQVANAQEFTDETCSQLILMTYRYIVDFY 119
           +++++    +    +   + F+D+  + L    Y+  +  Y
Sbjct: 61  QLVDEI---LKSATLFINERFSDKKGNDLFSTIYKAYLHLY 98


>lin0482 [K] COG1309 Transcriptional regulator
          Length = 186

 Score = 61.6 bits (148), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 48/166 (28%), Positives = 70/166 (42%), Gaps = 11/166 (6%)

Query: 30  TRQLIREAFRELLQHKGFDAITIKDIAQRATINRATFYAHYEDKYALLDEIIEQAFLKMI 89
           T++ I     EL QHK F+ I+I DI     +NR TFY H+ DKY LL    E  F   +
Sbjct: 7   TKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFYYHFTDKYDLLTWTYENDFFHCL 66

Query: 90  PGQVANAQEFTDETCSQLILMTYRYI---VDFYQICRMDSKSIATLVDSKI-KKMLRQII 145
              +      T E   + +L     I    DFY+       SI +   SK+   +   + 
Sbjct: 67  ADGI------TLENWDKHVLKMLESIKENADFYKNTVSADASILSFCFSKLTNSLFMDLF 120

Query: 146 ESIFMKGDVHRHARIVSAMTGS-AIHGAAHDWLTAGENDRPDLLVD 190
           E I   G V+   R+  A   S    G    W+T G  + P+ + +
Sbjct: 121 EKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEAPETIAN 166


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.325    0.138    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 14,021,869
Number of extensions: 548708
Number of successful extensions: 1539
Number of sequences better than 1.0e-05: 17
Number of HSP's gapped: 1539
Number of HSP's successfully gapped: 17
Length of query: 205
Length of database: 38,378,431
Length adjustment: 101
Effective length of query: 104
Effective length of database: 26,729,697
Effective search space: 2779888488
Effective search space used: 2779888488
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 113 (48.1 bits)