BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0055.p
         (297 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ykvT [M] COG3773 Cell wall hydrolyses involved in spore germi...   103   2e-22
CAC3081 [M] COG3773 Cell wall hydrolyses involved in spore germi...    91   3e-18
BH1631_2 [M] COG3773 Cell wall hydrolyses involved in spore germ...    77   2e-14
BS_sleB_2 [M] COG3773 Cell wall hydrolyses involved in spore ger...    76   8e-14
BH2879_2 [M] COG3773 Cell wall hydrolyses involved in spore germ...    73   6e-13

>BS_ykvT [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 208

 Score =  103 bits (258), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/122 (50%), Positives = 77/122 (63%), Gaps = 5/122 (4%)

Query: 174 TYAVSEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSP 233
           TY  SE +LL   ++V AEA+GE Y+GKVAVA+VVLNR     FPDTI  VIYQK+ F P
Sbjct: 90  TYTQSEKELL--SRLVHAEAKGESYKGKVAVASVVLNRTEKKGFPDTIRGVIYQKNAFEP 147

Query: 234 VANGRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNH 293
           VANG + + KP+ +SI+A   ALS  K    D  FF + K A D  +  SR+  + IG H
Sbjct: 148 VANGSINQ-KPDKESIEAAEEALSS-KNRETDAIFFYNPKTASDNWI-RSRKIVEKIGRH 204

Query: 294 TF 295
            F
Sbjct: 205 VF 206


>CAC3081 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 194

 Score = 90.5 bits (223), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 47/121 (38%), Positives = 71/121 (58%), Gaps = 1/121 (0%)

Query: 177 VSEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSPVAN 236
           ++  D+ L+ ++V AE+  EPY+GKVAVA+V+LNRL++  FP +I DVI QK  FS + +
Sbjct: 71  ITNNDINLMAQVVYAESCSEPYEGKVAVASVILNRLQNPEFPKSIGDVIKQKYAFSCIRD 130

Query: 237 GRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNHTFY 296
           G+++ V PN +   AV  AL G        YF+           +  ++  K IGNH F+
Sbjct: 131 GKIE-VTPNQECYNAVMDALHGKDPTPKAMYFYNPRISTSSWMNNIQKENVKVIGNHVFF 189

Query: 297 K 297
           K
Sbjct: 190 K 190


>BH1631_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 132

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/118 (38%), Positives = 65/118 (55%), Gaps = 3/118 (2%)

Query: 178 SEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSPVANG 237
           S+ D+ L+ + V  EA GEPY G+VAVA V+LNRL S  FPD +  VI++   F+ VA+G
Sbjct: 16  SDNDIQLMAQAVYGEARGEPYVGQVAVAAVILNRLNSPTFPDNVSGVIFEPLAFTAVADG 75

Query: 238 RLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNHTF 295
           ++  + P+  + +AV  AL+G       TY+F             SR   K IG H F
Sbjct: 76  QI-YMTPDETARRAVLDALNGQDPSGGATYYFNPDTATSGWI--WSRPQIKRIGKHIF 130


>BS_sleB_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 125

 Score = 75.9 bits (185), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/120 (35%), Positives = 66/120 (55%), Gaps = 3/120 (2%)

Query: 176 AVSEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQFSPVA 235
             S  D+ LL + V  EA GEPY+G+VA+A V+LNRL S  FP+++  VI++   F+ VA
Sbjct: 7   GFSNNDIRLLAQAVYGEARGEPYEGQVAIAAVILNRLNSPLFPNSVAGVIFEPLAFTAVA 66

Query: 236 NGRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNHTF 295
           +G++  ++PN  + +AV  A++G     +  Y+F              R   K IG H F
Sbjct: 67  DGQIY-MQPNETAREAVLDAINGWDPSEEALYYFNPDTATSPWI--WGRPQIKRIGKHIF 123


>BH2879_2 [M] COG3773 Cell wall hydrolyses involved in spore germination
          Length = 121

 Score = 72.8 bits (177), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/124 (45%), Positives = 74/124 (59%), Gaps = 9/124 (7%)

Query: 178 SEGDLLLLQKIVMAEAEGEPYQGKVAVANVVLNRLRSANFPDTIHDVIYQKSQ----FSP 233
           SE DLL   ++V AEAEGEPY GKVAVA VVLNR+   +FPD + DVI + +     FSP
Sbjct: 3   SERDLLA--RLVHAEAEGEPYAGKVAVAVVVLNRVDHPSFPDNVTDVINEVNSGYYAFSP 60

Query: 234 VANGRLKRVKPNADSIKAVTAALSGIKAVTDDTYFFLSLKLAQDLTVHHSRQYAKTIGNH 293
           V NGR++R   N ++ +AV  AL   +   + + +F + K A    V  +RQ    IGNH
Sbjct: 61  VQNGRIQR-PANDEAKRAVDEALQ-FRGQGNGSLYFYNPKTATSPYV-STRQQTIVIGNH 117

Query: 294 TFYK 297
            F K
Sbjct: 118 IFAK 121


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.317    0.128    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 17,773,648
Number of extensions: 585670
Number of successful extensions: 1684
Number of sequences better than 1.0e-05: 9
Number of HSP's gapped: 1680
Number of HSP's successfully gapped: 9
Length of query: 297
Length of database: 38,378,431
Length adjustment: 106
Effective length of query: 191
Effective length of database: 26,153,027
Effective search space: 4995228157
Effective search space used: 4995228157
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 115 (48.9 bits)