BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0370.0050.p (1531 letters) Database: COG 115,334 sequences; 38,378,431 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sll1502_2 [E] COG0069 Glutamate synthase domain 2 1097 0.0 BS_gltA_2 [E] COG0069 Glutamate synthase domain 2 1004 0.0 VC2373_2 [E] COG0069 Glutamate synthase domain 2 914 0.0 SMc04028_2 [E] COG0069 Glutamate synthase domain 2 885 0.0 AGl2101_2 [E] COG0069 Glutamate synthase domain 2 873 0.0 >sll1502_2 [E] COG0069 Glutamate synthase domain 2 Length = 252 Score = 1097 bits (2837), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/802 (0%), Positives = 0/802 (0%), Gaps = 2/802 (0%) Query: 397 LDIPAEDVLYKDRLRPGRMLLVDTKEGRIISDEEVKAAIASEQPYRQWLDEHLIGLDELP 456 + + R + + + E V L + Sbjct: 1 MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITG 60 Query: 457 DAPELPNPKHDNVQQLQQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRPQR 516 F + ++ + A A D Sbjct: 61 IDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLL 120 Query: 517 LYNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPESCRQISLDSPILSNED 576 + + V R L +S + Sbjct: 121 NPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWR 180 Query: 577 FAKIRHVRRAGFKSMSIPILFPAELGAEGLRIALERMNEAADRVMAKGHNILILSDRGVD 636 + + + + + +++ + + + + Sbjct: 181 TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQILLA 240 Query: 637 RENAAIPXXXXXXXXXXXXIRSGTRTKVSILLESGEPREVHHYALLLGYGVSAVNPYLAF 696 Sbjct: 241 300 Query: 697 ESLDDMIGQGLLRGISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFEAVGLNA 756 Sbjct: 301 360 Query: 757 EFVDRYFTWTPSRIGGIGLEEVAAESLAHHYRAFTDKDGNDKVLDSGGEYQWRSDGEEHL 816 Sbjct: 361 420 Query: 817 FNPQTIHLLQHSVRSGDYGLYKKYAALVQGESEKHQTLRSMLQFKPVNAPVPLDEVESAE 876 Sbjct: 421 - 479 Query: 877 SIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFT-PDSNGDSRRSA 935 Sbjct: 480 539 Query: 936 IKQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAEVRGSTAGVGLI 995 Sbjct: 540 599 Query: 996 SPPPHHDIYSIEDLAELIYDLKNANPRANINVKLVSEVGVGTIAAGVAKGRADIILISGY 1055 Sbjct: 600 659 Query: 1056 DGGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLSGRDLAVAVLLG 1115 Sbjct: 660 719 Query: 1116 AEEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPELRKNFTGDPQHVVNFMTFVAQDL 1175 Sbjct: 720 779 Query: 1176 REIMAELGFRTIEEMVGRTDCL 1197 Sbjct: 780 801 >BS_gltA_2 [E] COG0069 Glutamate synthase domain 2 Length = 252 Score = 1004 bits (2597), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/801 (0%), Positives = 0/801 (0%), Gaps = 12/801 (1%) Query: 397 LDIPAEDVLYKDRLRPGRMLLVDTKEGRIISDEEVKAAIASEQPYRQWLDEHLIGLDELP 456 + + R + + + E V L + Sbjct: 1 MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAAR--I 58 Query: 457 DAPELPNPKHDNVQQLQQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRPQR 516 + + + D+R A A S+ + L Sbjct: 59 TGIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVS 118 Query: 517 LYNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPESCRQISLDSPILSNED 576 L N + Q+ + ++ + P+R L + Sbjct: 119 LLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDI 178 Query: 577 FAKIRHVRRAGFKSMSIPILFPAELGAEGLRIALERMNEAADRVMAKGHNILILSDRGVD 636 + + + +++ + + + + H +L + Sbjct: 179 WRTTYYHQMPSHQAIIDWVTA-----TGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQE 233 Query: 637 RENAAIPXXXXXXXXXXXXIRSGTRTKVSILLESGEPREVHHYALLLGYGVSAVNPYLAF 696 Sbjct: 234 293 Query: 697 ESLDDMIGQGLLRGISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFEAVGLNA 756 Sbjct: 294 - 352 Query: 757 EFVDRYFTWTPSRIGGIGLEEVAAESLAHHYRAFTDKDGNDKVLDSGGEYQWRSDGEEHL 816 Sbjct: 353 -- 410 Query: 817 FNPQTIHLLQHSVRSGDYGLYKKYAALVQGESEKHQTLRSMLQFKPVNAPVPLDEVESAE 876 Sbjct: 411 -- 468 Query: 877 SIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFTPDSNGDSRRSAI 936 Sbjct: 469 528 Query: 937 KQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAEVRGSTAGVGLIS 996 Sbjct: 529 588 Query: 997 PPPHHDIYSIEDLAELIYDLKNANPRANINVKLVSEVGVGTIAAGVAKGRADIILISGYD 1056 Sbjct: 589 648 Query: 1057 GGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLSGRDLAVAVLLGA 1116 Sbjct: 649 708 Query: 1117 EEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPELRKNFTGDPQHVVNFMTFVAQDLR 1176 Sbjct: 709 768 Query: 1177 EIMAELGFRTIEEMVGRTDCL 1197 Sbjct: 769 789 >VC2373_2 [E] COG0069 Glutamate synthase domain 2 Length = 252 Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/802 (0%), Positives = 0/802 (0%), Gaps = 3/802 (0%) Query: 399 IPAEDVLYKDRLRPGRMLLVDTKEGRIISDEEVKAAIASEQPYRQWLDEHLIGLDELPDA 458 + + R R+ + A P Sbjct: 1 MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARITG 60 Query: 459 PEL-PNPKHDNVQQLQQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRPQRL 517 + P + L + + L Sbjct: 61 IDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVSLL 120 Query: 518 YNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPESCRQISLDSPILSNEDF 577 N + + I ++ + Sbjct: 121 NPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDIWR 180 Query: 578 AKIRHVRRAGFKSMSIPILFPAELGAEGLRIALERMNEAADRVMAKGHNILILSDRGVDR 637 H + + + L + +++ M + L + + + Sbjct: 181 TTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQILLA 240 Query: 638 ENAAIPXXXXXXXXXXXXIRSGTRTKVSILLESGEPREVHHYALLLGYGVSAVNPYLAFE 697 Sbjct: 241 300 Query: 698 SLDDMIGQGLLRG-ISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFEAVGLNA 756 Sbjct: 301 360 Query: 757 EFVDRYFTWTPSRIGGIGLEEVAAESLAHHYRAFTDKDGNDKVLDSGGEYQWRSDGEEHL 816 Sbjct: 361 420 Query: 817 FNPQTIHLLQHSVRSGDYGLYKKYAALVQGESEKHQTLRSMLQF-KPVNAPVPLDEVESA 875 Sbjct: 421 480 Query: 876 ESIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFTPDSNGDSRRSA 935 Sbjct: 481 540 Query: 936 IKQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAEVRGSTAGVGLI 995 Sbjct: 541 600 Query: 996 SPPPHHDIYSIEDLAELIYDLKNANPRANINVKLVSEVGVGTIAAGVAKGRADIILISGY 1055 Sbjct: 601 660 Query: 1056 DGGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLSGRDLAVAVLLG 1115 Sbjct: 661 720 Query: 1116 AEEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPELRKNFTGDPQHVVNFMTFVAQDL 1175 Sbjct: 721 780 Query: 1176 REIMAELGFRTIEEMVGRTDCL 1197 Sbjct: 781 802 >SMc04028_2 [E] COG0069 Glutamate synthase domain 2 Length = 211 Score = 885 bits (2287), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/814 (0%), Positives = 0/814 (0%), Gaps = 14/814 (1%) Query: 397 LDIPAEDVLYKDRLRPGRMLLVDTKEGRIISDEEVKAAIASEQPYRQWLDEHLIGLDELP 456 ++ + + A + Sbjct: 1 MNKAKRLEILTRLRENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVAN- 59 Query: 457 DAPELPNPKHDNVQQL--QQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRP 514 P + + Y + + A L L Sbjct: 60 -TPAAMLELGVEGVKTYIKTIGLYNSKAENIIKTCRILLEQHNGEVPEDRAALEALPGVG 118 Query: 515 QRLYNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPES-CRQISLDSPILS 573 ++ N +D + T G ++ + Sbjct: 119 RKTANVVLNTAFGWPTIAVDTHIFRVCNRTQFAPGKNVEQVEEKLLKVVPAEFKVDCHHW 178 Query: 574 NEDFAKIRHVRRAG--FKSMSIPILFPAELGAEGLRIALERMNEAADRVMAKGHNILILS 631 + + R Sbjct: 179 LILHGRYTCIARKPRC 238 Query: 632 DRGVDRENAAIPXXXXXXXXXXXXIRSGTRTKVSILLESGEPREVHHYALLLGYGVSAVN 691 Sbjct: 239 298 Query: 692 PYLAFESLDDMIGQG-LLRGISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFE 750 Sbjct: 299 358 Query: 751 AVGLNAEFVDRYFTWTPSRIGGIGLEEVAAESLAHHYRAFTDKDGNDKVLDSGGEYQWRS 810 Sbjct: 359 418 Query: 811 DGEEHLFNPQTIHLLQHSVRSGDYGLYKKYAALVQGESEKHQTLRSMLQFKPVN----AP 866 Sbjct: 419 478 Query: 867 VPLDEVESAESIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFTP- 925 Sbjct: 479 538 Query: 926 -DSNGDSRRSAIKQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAE 984 Sbjct: 539 598 Query: 985 VRGSTAGVGLISPPPHHDIYSIEDLAELIYDLKNANPRANINVKLVSEVGVGTIAAGVAK 1044 Sbjct: 599 658 Query: 1045 GRADIILISGYDGGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLS 1104 Sbjct: 659 718 Query: 1105 GRDLAVAVLLGAEEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPELRKNFTGDPQHV 1164 Sbjct: 719 778 Query: 1165 VNFMTFVAQDLREIMAELGFRTIEEMVGRTDCLD 1198 Sbjct: 779 812 >AGl2101_2 [E] COG0069 Glutamate synthase domain 2 Length = 252 Score = 873 bits (2256), Expect = 0.0, Method: Compositional matrix adjust. Identities = 0/814 (0%), Positives = 0/814 (0%), Gaps = 14/814 (1%) Query: 397 LDIPAEDVLYKDRLRPGRMLLVDTKEGRIISDEEVKAAIASEQPYRQWLDEHLIGLDELP 456 + + R + + + E V L + Sbjct: 1 MSDWNPSLYLHFSAERSRPAVELLARVPLENVEYVADLGCGPGNSTALLQQRWPAARIT- 59 Query: 457 DAPELPNPKHDNVQQL--QQSFGYTFEDLRKVLEPMASTGAEAVGSMGYDAPLAVLSDRP 514 + + F + ++ + A A D Sbjct: 60 -GIDSSPAMIAEARSALPDCQFVEADIRNWQPVQALDLIFANASLQWLPDHYELFPHLVS 118 Query: 515 QRLYNYFKQMFAQVTNPPIDAIREELVTSTATTIGPERNLLKPEPES-CRQISLDSPILS 573 + + V R L + Sbjct: 119 LLNPQGVLAVQMPDNWLEPTHVLMREVAWEQNYPDRGREPLAGVHAYYDILSEAGCEVDI 178 Query: 574 NEDFAKIRHVRRAG--FKSMSIPILFPAELGAEGLRIALERMNEAADRVMAKGHNILILS 631 + + + + E + + + Sbjct: 179 WRTTYYHQMPSHQAIIDWVTATGLRPWLQDLTESEQQLFLKRYHQMLEEQYPLQENGQIL 238 Query: 632 DRGVDRENAAIPXXXXXXXXXXXXIRSGTRTKVSILLESGEPREVHHYALLLGYGVSAVN 691 Sbjct: 239 298 Query: 692 PYLAFESLDDMIGQGLL-RGISHEKAVKNYIKAATKSVVKILSKMGISTIQSYRGAQIFE 750 Sbjct: 299 358 Query: 751 AVGLNAEFVDRYFTWTPSRIGGIGLEEVAAESLAHHYRAFTDKDGNDKVLDSGGEYQWRS 810 Sbjct: 359 418 Query: 811 DGEEHLFNPQTIHLLQHSVRSGDYGLYKKYAALVQGESEKHQTLRSMLQFKPVNA----P 866 Sbjct: 419 478 Query: 867 VPLDEVESAESIMKRFKTGAMSFGSISKEAHETLAIAMNRIGGKSNTGEGGEDPARFTPD 926 Sbjct: 479 538 Query: 927 SNG--DSRRSAIKQVASGRFGVTSNYLVNADEIQIKMAQGAKPGEGGQLPGRKVYPWVAE 984 Sbjct: 539 598 Query: 985 VRGSTAGVGLISPPPHHDIYSIEDLAELIYDLKNANPRANINVKLVSEVGVGTIAAGVAK 1044 Sbjct: 599 658 Query: 1045 GRADIILISGYDGGTGASPMNSIRHAGLPWELGLAETHQTLMLNNLRDRVVLETDGKMLS 1104 Sbjct: 659 718 Query: 1105 GRDLAVAVLLGAEEYGFATAPLVAVGCIMMRVCQMDTCPVGVATQNPELRKNFTGDPQHV 1164 Sbjct: 719 778 Query: 1165 VNFMTFVAQDLREIMAELGFRTIEEMVGRTDCLD 1198 Sbjct: 779 812 Database: COG Posted date: Aug 3, 2010 9:58 AM Number of letters in database: 38,378,431 Number of sequences in database: 115,334 Lambda K H 0.317 0.135 0.392 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 115334 Number of Hits to DB: 116,702,596 Number of extensions: 5322220 Number of successful extensions: 11596 Number of sequences better than 1.0e-05: 39 Number of HSP's gapped: 11460 Number of HSP's successfully gapped: 40 Length of query: 1531 Length of database: 38,378,431 Length adjustment: 119 Effective length of query: 1412 Effective length of database: 24,653,685 Effective search space: 34811003220 Effective search space used: 34811003220 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 123 (52.0 bits)