BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0046.p
         (152 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BB0245 [M] COG1664 Integral membrane protein CcmA involved in ce...    65   3e-11
TP0048 [M] COG1664 Integral membrane protein CcmA involved in ce...    60   1e-09
TP0253 [M] COG1664 Integral membrane protein CcmA involved in ce...    56   2e-08
BB0538 [M] COG1664 Integral membrane protein CcmA involved in ce...    54   1e-07
TP0267 [M] COG1664 Integral membrane protein CcmA involved in ce...    48   5e-06

>BB0245 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 184

 Score = 65.5 bits (158), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 32/102 (31%), Positives = 63/102 (61%)

Query: 22  SLIGHGGTLEGKLNCDTNLRIEGNFSGEINCQGTVTVGEQGTVRSSIRAQDIIIAGKVYG 81
           +++G G   +G L  +  +R++G+F G I+    V +GE G V+SSI A +++I+G V G
Sbjct: 24  TIVGVGDFFKGDLVSNNFIRLDGDFIGTISSTKRVIIGESGRVKSSIDANELVISGMVVG 83

Query: 82  DVIADQRLMMTDTGQLHGNILAGSLSIMEGSVLNGSVAMAEE 123
           ++ A  ++ +  +G + GNI   S+ + EG++++G + +  E
Sbjct: 84  NIYAKSKIKIFASGCVIGNISCKSIEVEEGAIIDGYMDIGAE 125


>TP0048 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 143

 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 1/113 (0%)

Query: 18  KSTDSLIGHGGTLEGKLNCDTNLRIEGNFSGEINCQGTVTVGEQGTVRSSIRAQDIIIAG 77
           +S ++LIG G  + G +    ++RIEG+  G++   G V +G++  VR  IR   II+ G
Sbjct: 7   RSMNTLIGAGSRISGNVVVPGSVRIEGDVDGDVITTGHVVIGKRARVRGVIRVGSIIVGG 66

Query: 78  KVYGDVIADQRLMMTDTGQLHGNILAGSLSIMEGSVLNG-SVAMAEEPATEKA 129
            V GD++A + + +  +G + G +L   + + E + L+G   A+A++    K 
Sbjct: 67  MVEGDIVASEAVQVLPSGVILGAVLTRKIVVDEQAFLDGFCYAVADQEGFNKV 119


>TP0253 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 137

 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 42/127 (33%), Positives = 59/127 (46%), Gaps = 15/127 (11%)

Query: 25  GHGGT-------LEGKLNCDTNLRIEGNFSGEINCQGTVTV--GEQGTVRSSIRAQDIII 75
           GHG T        +G L    NL I G FSG I+ QG +T+  G    V+ + RA  I +
Sbjct: 9   GHGKTVLGAKTVFDGVLRFKGNLHIRGKFSGAIDAQGCLTIAPGAVCAVQYA-RAVSIFV 67

Query: 76  AGKVYGDVIADQRLMMTDTGQLHGNILAGSLSIMEGSVLNGSVAMAEEPATEKAGGL--- 132
            G+V G++    R+ M D  ++ G++ A  + I +G    GSV M  E    K       
Sbjct: 68  EGEVRGNLTVVDRVEMRDGSRVFGDVTASRIKICDGVTFEGSVCMTREGNVSKRDLFSVQ 127

Query: 133 --QKKEH 137
             Q KEH
Sbjct: 128 SEQLKEH 134


>BB0538 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 132

 Score = 53.5 bits (127), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 55/108 (50%)

Query: 13  LQMPVKSTDSLIGHGGTLEGKLNCDTNLRIEGNFSGEINCQGTVTVGEQGTVRSSIRAQD 72
           L+    ST ++I      EG +  +  + IEG   G IN   ++ + E+  V + I+ Q 
Sbjct: 20  LEFEESSTQNVIKKNFEFEGYIESNKPIIIEGKLKGLINSSNSIYLREKADVEAEIKCQH 79

Query: 73  IIIAGKVYGDVIADQRLMMTDTGQLHGNILAGSLSIMEGSVLNGSVAM 120
           ++  GK+ G++ A + + +  TG+L GNI    L I  G++  G+  M
Sbjct: 80  LLNHGKIKGNIEALKTIKIYKTGKLIGNIKTKELFIDSGAMFKGNCEM 127


>TP0267 [M] COG1664 Integral membrane protein CcmA involved in cell shape
           determination
          Length = 121

 Score = 48.1 bits (113), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 27/93 (29%), Positives = 45/93 (48%)

Query: 30  LEGKLNCDTNLRIEGNFSGEINCQGTVTVGEQGTVRSSIRAQDIIIAGKVYGDVIADQRL 89
             G +  +    + G F G I   G + V EQ  VR+ I A  ++I G+V G+V A   +
Sbjct: 27  FSGTVRFEEPFMVRGVFEGSIESSGDLMVEEQARVRAEIVADRVVIKGEVIGNVTAMSVV 86

Query: 90  MMTDTGQLHGNILAGSLSIMEGSVLNGSVAMAE 122
            +   G+L G++ A  + +  G   +G  +M E
Sbjct: 87  RVFPCGRLIGDVTAPEVVLESGCFFSGVCSMPE 119


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.309    0.128    0.354 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 10,953,687
Number of extensions: 429772
Number of successful extensions: 542
Number of sequences better than 1.0e-05: 6
Number of HSP's gapped: 543
Number of HSP's successfully gapped: 6
Length of query: 152
Length of database: 38,378,431
Length adjustment: 97
Effective length of query: 55
Effective length of database: 27,191,033
Effective search space: 1495506815
Effective search space used: 1495506815
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 111 (47.4 bits)