BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0034.p
         (163 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DRC0013 [M] COG0860 N-acetylmuramoyl-L-alanine amidase                 76   2e-14

>DRC0013 [M] COG0860 N-acetylmuramoyl-L-alanine amidase
          Length = 212

 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 7/130 (5%), Positives = 15/130 (11%), Gaps = 4/130 (3%)

Query: 15  SLEDTXXXXXXXXXXXXPGMVIGLDGDLGAGKTAFSQSFARHL-GVQGIVSSPTFTIIKE 73
           S                   +             +         G      +     +++
Sbjct: 6   SFVRWPLRSALRTTVSTRFSLFHDPFLGKEQTMPYDVLIDPGHGGADSGAVNSKTNTLEK 65

Query: 74  YEG-RLPLYHMDVYRI-SLQEADELGLDEYFYGQGVCLVEWSRIIADLMPPRLLHIAIET 131
                  L                   D           +  R  A +        A   
Sbjct: 66  NLNMDSSLSVEYFLGQRGRTTKMTRTTDVDIDN-YQRAYQGVREGAKIFVSVHHDSAEVG 124

Query: 132 CGPEERLITV 141
                     
Sbjct: 125 RSLVYHDNKA 134


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.320    0.140    0.429 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 12,235,584
Number of extensions: 561718
Number of successful extensions: 1985
Number of sequences better than 1.0e-05: 1
Number of HSP's gapped: 1984
Number of HSP's successfully gapped: 1
Length of query: 163
Length of database: 38,378,431
Length adjustment: 98
Effective length of query: 65
Effective length of database: 27,075,699
Effective search space: 1759920435
Effective search space used: 1759920435
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 111 (47.4 bits)