BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0027.p
         (89 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydiF [R] COG0488 ATPase components of ABC transporters with d...    49   2e-06
SA1852 [R] COG0488 ATPase components of ABC transporters with du...    47   7e-06
lin2179 [R] COG0488 ATPase components of ABC transporters with d...    47   7e-06

>BS_ydiF [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains
          Length = 531

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 0/91 (0%), Positives = 0/91 (0%), Gaps = 3/91 (3%)

Query: 1   VPAAEKG-AALSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDY 59
                                                                       
Sbjct: 551                                                              610

Query: 60  VALQE-HESELKLKKEQLGNLFSEWENLADE 89
                                          
Sbjct: 611 -                               640


>SA1852 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains
          Length = 642

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/81 (37%), Positives = 50/81 (61%), Gaps = 10/81 (12%)

Query: 11  SYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDY-----VALQEH 65
           SY  +K+ +RE+R  +R+ISE E  I  LE  I +I+ ++T+PEV+ +      +A+Q+ 
Sbjct: 563 SYHNQKEQRREQRKLERQISECENEIETLETTILQIDEQLTQPEVYNNPQKANELAIQKQ 622

Query: 66  ESELKLKKEQLGNLFSEWENL 86
           +SE KL+     +  S+WE L
Sbjct: 623 DSEQKLE-----HAMSKWEEL 638


>lin2179 [R] COG0488 ATPase components of ABC transporters with duplicated
           ATPase domains
          Length = 650

 Score = 47.0 bits (110), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 27/80 (33%), Positives = 52/80 (65%)

Query: 10  LSYEAEKQAKREERNRQRRISELEENIAVLEEDIARIENEMTRPEVFQDYVALQEHESEL 69
           L+Y+ EK+ ++  R R+R++ E+E+++   ++ IA +E ++T+PE+FQD+    E   EL
Sbjct: 567 LNYQEEKEQQKLLRQRKRKLEEVEKSMEETDKKIAELELQLTKPEIFQDHEKAFEITQEL 626

Query: 70  KLKKEQLGNLFSEWENLADE 89
            + K +   L  EWE +++E
Sbjct: 627 DVVKARGEKLMEEWEKVSEE 646


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.306    0.125    0.325 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 6,042,148
Number of extensions: 187060
Number of successful extensions: 446
Number of sequences better than 1.0e-05: 4
Number of HSP's gapped: 447
Number of HSP's successfully gapped: 4
Length of query: 89
Length of database: 38,378,431
Length adjustment: 59
Effective length of query: 30
Effective length of database: 31,573,725
Effective search space: 947211750
Effective search space used: 947211750
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 43 (22.0 bits)
S2: 109 (46.6 bits)