BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0023.p
         (171 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Rv3324c [H] COG0315 Molybdenum cofactor biosynthesis enzyme           120   1e-27
MT3425 [H] COG0315 Molybdenum cofactor biosynthesis enzyme            120   1e-27
Rv0864 [H] COG0315 Molybdenum cofactor biosynthesis enzyme            114   1e-25
MT0887 [H] COG0315 Molybdenum cofactor biosynthesis enzyme            114   1e-25
Rv3111 [H] COG0315 Molybdenum cofactor biosynthesis enzyme            103   2e-22

>Rv3324c [H] COG0315 Molybdenum cofactor biosynthesis enzyme
          Length = 177

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 75/113 (66%)

Query: 3   LTHFNEQGRARMVDVSDKEITKRTAAARSSVEMAPGTLAAIKAGRIGKGDVLAVAQVAGI 62
           LTH +EQG ARMVDVS K +T R A A  +V M P TL  I  G   KGDV+A A++AGI
Sbjct: 8   LTHLDEQGAARMVDVSAKAVTLRRARASGAVLMKPSTLDMICHGTAAKGDVIATARIAGI 67

Query: 63  MAAKKTADWIPMCHPLPLTGIDIRFWDNSEDRLYIEATVKTTGKTGVEMEALT 115
           MAAK+T + IP+CHPL +  + +       DRL I ATV T  +TGVEMEALT
Sbjct: 68  MAAKRTGELIPLCHPLGIEAVTVTLEPQGADRLSIAATVTTVARTGVEMEALT 120


>MT3425 [H] COG0315 Molybdenum cofactor biosynthesis enzyme
          Length = 184

 Score =  120 bits (300), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 62/113 (54%), Positives = 75/113 (66%)

Query: 3   LTHFNEQGRARMVDVSDKEITKRTAAARSSVEMAPGTLAAIKAGRIGKGDVLAVAQVAGI 62
           LTH +EQG ARMVDVS K +T R A A  +V M P TL  I  G   KGDV+A A++AGI
Sbjct: 15  LTHLDEQGAARMVDVSAKAVTLRRARASGAVLMKPSTLDMICHGTAAKGDVIATARIAGI 74

Query: 63  MAAKKTADWIPMCHPLPLTGIDIRFWDNSEDRLYIEATVKTTGKTGVEMEALT 115
           MAAK+T + IP+CHPL +  + +       DRL I ATV T  +TGVEMEALT
Sbjct: 75  MAAKRTGELIPLCHPLGIEAVTVTLEPQGADRLSIAATVTTVARTGVEMEALT 127


>Rv0864 [H] COG0315 Molybdenum cofactor biosynthesis enzyme
          Length = 167

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 60/114 (52%), Positives = 80/114 (70%), Gaps = 1/114 (0%)

Query: 2   ELTHFNEQGRARMVDVSDKEITKRTAAARSSVEMAPGTLAAIKAGRIGKGDVLAVAQVAG 61
           EL+H +E+G A MVD+++K  TKRTA A   +  +   +A I  G + KGD LA A+VAG
Sbjct: 14  ELSHQDERGAAHMVDITEKATTKRTAVAAGILRTSAQVVALISTGGLPKGDALATARVAG 73

Query: 62  IMAAKKTADWIPMCHPLPLTGIDIRFWDNSEDRLYIEATVKTTGKTGVEMEALT 115
           IMAAK+T+D IP+CH L LTG+D+ F     D + I ATV++T +TGVEMEALT
Sbjct: 74  IMAAKRTSDLIPLCHQLALTGVDVDFTVGQLD-IEITATVRSTDRTGVEMEALT 126


>MT0887 [H] COG0315 Molybdenum cofactor biosynthesis enzyme
          Length = 211

 Score =  114 bits (284), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 7/114 (6%), Positives = 20/114 (17%), Gaps = 1/114 (0%)

Query: 2   ELTHFNEQGRARMVDVSDKEITKRTAAARSSVEMAPGTLAAIKAGRIGKGDVLAVAQVAG 61
              + +           +  I    +A  + V +   T             +    +   
Sbjct: 14  RENNPHPTTELNFSSPFELLIAVLLSAQATDVSVNKATAKLYPVANTPAAMLELGVEGVK 73

Query: 62  IMAAKKTADWIPMCHPLPLTGIDIRFWDNSEDRLYIEATVKTTGKTGVEMEALT 115
                         + +    I +   +         A     G        + 
Sbjct: 74  TYIKTIGLYNSKAENIIKTCRILLEQHNGEVP-EDRAALEALPGVGRKTANVVL 126


>Rv3111 [H] COG0315 Molybdenum cofactor biosynthesis enzyme
          Length = 170

 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 61/115 (53%), Positives = 75/115 (65%)

Query: 1   MELTHFNEQGRARMVDVSDKEITKRTAAARSSVEMAPGTLAAIKAGRIGKGDVLAVAQVA 60
           + LTH +E+G ARMVDVS+K +T R A A   V M P TL  I  G   KGDV+A A++A
Sbjct: 6   LALTHIDERGAARMVDVSEKPVTLRVAKASGLVIMKPSTLRMISDGAAAKGDVMAAARIA 65

Query: 61  GIMAAKKTADWIPMCHPLPLTGIDIRFWDNSEDRLYIEATVKTTGKTGVEMEALT 115
           GI AAK+T D IP+CHPL L  + +       DR+ I AT  T G+TGVEMEALT
Sbjct: 66  GIAAAKRTGDLIPLCHPLGLDAVSVTITPCEPDRVKILATTTTLGRTGVEMEALT 120


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.318    0.133    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 11,943,234
Number of extensions: 457707
Number of successful extensions: 824
Number of sequences better than 1.0e-05: 7
Number of HSP's gapped: 822
Number of HSP's successfully gapped: 7
Length of query: 171
Length of database: 38,378,431
Length adjustment: 99
Effective length of query: 72
Effective length of database: 26,960,365
Effective search space: 1941146280
Effective search space used: 1941146280
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 112 (47.8 bits)