BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0370.0021.p
         (69 letters)

Database: COG 
           115,334 sequences; 38,378,431 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BS_ydiI [U] COG1826 Sec-independent protein secretion pathway co...    50   1e-06
BH0552 [U] COG1826 Sec-independent protein secretion pathway com...    48   4e-06

>BS_ydiI [U] COG1826 Sec-independent protein secretion pathway components
          Length = 136

 Score = 49.7 bits (117), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 3/39 (7%), Positives = 5/39 (12%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIND 39
            +           L      +G    E           
Sbjct: 10 EALNAMGEGNMVGFLDIRFEHIGDDTLEATMPVDSRTKQ 48


>BH0552 [U] COG1826 Sec-independent protein secretion pathway components
          Length = 65

 Score = 47.8 bits (112), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 19/39 (48%), Positives = 30/39 (76%)

Query: 1  LLVILALLLFGPNKLPELGRAVGRTFREFKDGAREIIND 39
          ++ ++ALL+FGP KLPELG+A G T REFK+  + + ++
Sbjct: 12 IIALVALLIFGPKKLPELGKAAGNTLREFKNATKGLADE 50


  Database: COG
    Posted date:  Aug 3, 2010  9:58 AM
  Number of letters in database: 38,378,431
  Number of sequences in database:  115,334
  
Lambda     K      H
   0.324    0.145    0.416 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 115334
Number of Hits to DB: 3,843,439
Number of extensions: 75620
Number of successful extensions: 160
Number of sequences better than 1.0e-05: 3
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 3
Length of query: 69
Length of database: 38,378,431
Length adjustment: 41
Effective length of query: 28
Effective length of database: 33,649,737
Effective search space: 942192636
Effective search space used: 942192636
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 109 (46.6 bits)